Hb_000291_280

Information

Type -
Description -
Location Contig291: 246442-261337
Sequence    

Annotation

kegg
ID pmum:103332967
description sporulation-specific protein 15
nr
ID XP_012078117.1
description PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GUI9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s09230g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30523: 249804-253557 , PASA_asmbl_30528: 256268-261227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_280 0.0 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
2 Hb_005227_070 0.1102120437 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_000427_030 0.1290046691 - - conserved hypothetical protein [Ricinus communis]
4 Hb_098993_010 0.130867147 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
5 Hb_000088_040 0.1316723815 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
6 Hb_022148_010 0.1335015228 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
7 Hb_127003_010 0.1407883042 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
8 Hb_000997_210 0.1409177733 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
9 Hb_003209_020 0.1424215678 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
10 Hb_000397_070 0.1460586026 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
11 Hb_012340_010 0.1485189496 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
12 Hb_011218_060 0.1500001586 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
13 Hb_012055_020 0.1505237966 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
14 Hb_034083_010 0.1524046803 - - conserved hypothetical protein [Ricinus communis]
15 Hb_073171_110 0.1535722338 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
16 Hb_153258_010 0.1539785679 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
17 Hb_001767_010 0.1568442605 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
18 Hb_000193_250 0.1581773487 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
19 Hb_011174_070 0.1583299356 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
20 Hb_007575_040 0.1583369077 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000291_280 Hb_000291_280 Hb_005227_070 Hb_005227_070 Hb_000291_280--Hb_005227_070 Hb_000427_030 Hb_000427_030 Hb_000291_280--Hb_000427_030 Hb_098993_010 Hb_098993_010 Hb_000291_280--Hb_098993_010 Hb_000088_040 Hb_000088_040 Hb_000291_280--Hb_000088_040 Hb_022148_010 Hb_022148_010 Hb_000291_280--Hb_022148_010 Hb_127003_010 Hb_127003_010 Hb_000291_280--Hb_127003_010 Hb_034083_010 Hb_034083_010 Hb_005227_070--Hb_034083_010 Hb_012055_020 Hb_012055_020 Hb_005227_070--Hb_012055_020 Hb_002997_100 Hb_002997_100 Hb_005227_070--Hb_002997_100 Hb_005227_070--Hb_098993_010 Hb_005227_070--Hb_000088_040 Hb_011174_070 Hb_011174_070 Hb_000427_030--Hb_011174_070 Hb_002903_070 Hb_002903_070 Hb_000427_030--Hb_002903_070 Hb_001767_010 Hb_001767_010 Hb_000427_030--Hb_001767_010 Hb_004800_160 Hb_004800_160 Hb_000427_030--Hb_004800_160 Hb_000025_480 Hb_000025_480 Hb_000427_030--Hb_000025_480 Hb_003057_120 Hb_003057_120 Hb_000427_030--Hb_003057_120 Hb_003297_030 Hb_003297_030 Hb_098993_010--Hb_003297_030 Hb_007575_040 Hb_007575_040 Hb_098993_010--Hb_007575_040 Hb_098993_010--Hb_000025_480 Hb_007943_080 Hb_007943_080 Hb_098993_010--Hb_007943_080 Hb_185467_020 Hb_185467_020 Hb_098993_010--Hb_185467_020 Hb_007558_140 Hb_007558_140 Hb_098993_010--Hb_007558_140 Hb_176022_020 Hb_176022_020 Hb_000088_040--Hb_176022_020 Hb_000230_110 Hb_000230_110 Hb_000088_040--Hb_000230_110 Hb_003404_030 Hb_003404_030 Hb_000088_040--Hb_003404_030 Hb_000088_040--Hb_012055_020 Hb_000088_040--Hb_098993_010 Hb_085863_020 Hb_085863_020 Hb_022148_010--Hb_085863_020 Hb_010436_020 Hb_010436_020 Hb_022148_010--Hb_010436_020 Hb_000122_130 Hb_000122_130 Hb_022148_010--Hb_000122_130 Hb_010436_030 Hb_010436_030 Hb_022148_010--Hb_010436_030 Hb_000139_380 Hb_000139_380 Hb_022148_010--Hb_000139_380 Hb_000041_150 Hb_000041_150 Hb_127003_010--Hb_000041_150 Hb_182424_010 Hb_182424_010 Hb_127003_010--Hb_182424_010 Hb_170193_010 Hb_170193_010 Hb_127003_010--Hb_170193_010 Hb_153258_010 Hb_153258_010 Hb_127003_010--Hb_153258_010 Hb_127003_010--Hb_000139_380 Hb_127003_010--Hb_098993_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.1227 7.19004 5.59881 10.7788 95.2347 51.4748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.4647 26.6391 108.486 17.7309 10.3752

CAGE analysis