Hb_000294_050

Information

Type -
Description -
Location Contig294: 66497-71996
Sequence    

Annotation

kegg
ID rcu:RCOM_0307970
description hypothetical protein
nr
ID XP_012077789.1
description PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
swissprot
ID Q94AX2
description Protein PTST, chloroplastic OS=Arabidopsis thaliana GN=PTST PE=1 SV=1
trembl
ID A0A067KMZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13429 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30761: 66530-67555 , PASA_asmbl_30762: 68247-68586 , PASA_asmbl_30763: 68918-69151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000294_050 0.0 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
2 Hb_001195_070 0.1513415835 - - PREDICTED: protein RER1B-like [Jatropha curcas]
3 Hb_007477_050 0.1735264037 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
4 Hb_003103_010 0.1742450847 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000175_260 0.1750806857 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
6 Hb_000345_080 0.1752410213 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
7 Hb_006153_030 0.1816447512 - - PREDICTED: probable transaldolase [Jatropha curcas]
8 Hb_128196_020 0.1846957949 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Nelumbo nucifera]
9 Hb_001104_130 0.1858909009 - - C-14 sterol reductase, putative [Ricinus communis]
10 Hb_002477_010 0.1875438733 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008206_100 0.1876908577 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
12 Hb_000172_440 0.189052263 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
13 Hb_007943_200 0.1894206128 - - Uncharacterized protein isoform 2 [Theobroma cacao]
14 Hb_000599_200 0.1896329019 - - ABC transporter family protein [Populus trichocarpa]
15 Hb_000445_150 0.1905455364 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
16 Hb_008699_030 0.1914594915 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
17 Hb_003994_020 0.1929185232 - - -
18 Hb_000016_060 0.1971696218 - - mads box protein, putative [Ricinus communis]
19 Hb_009680_020 0.1988042694 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
20 Hb_004881_030 0.1993757378 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000294_050 Hb_000294_050 Hb_001195_070 Hb_001195_070 Hb_000294_050--Hb_001195_070 Hb_007477_050 Hb_007477_050 Hb_000294_050--Hb_007477_050 Hb_003103_010 Hb_003103_010 Hb_000294_050--Hb_003103_010 Hb_000175_260 Hb_000175_260 Hb_000294_050--Hb_000175_260 Hb_000345_080 Hb_000345_080 Hb_000294_050--Hb_000345_080 Hb_006153_030 Hb_006153_030 Hb_000294_050--Hb_006153_030 Hb_008699_030 Hb_008699_030 Hb_001195_070--Hb_008699_030 Hb_015675_030 Hb_015675_030 Hb_001195_070--Hb_015675_030 Hb_001195_070--Hb_000175_260 Hb_001584_240 Hb_001584_240 Hb_001195_070--Hb_001584_240 Hb_001195_070--Hb_003103_010 Hb_000671_130 Hb_000671_130 Hb_001195_070--Hb_000671_130 Hb_000172_440 Hb_000172_440 Hb_007477_050--Hb_000172_440 Hb_000189_480 Hb_000189_480 Hb_007477_050--Hb_000189_480 Hb_001104_130 Hb_001104_130 Hb_007477_050--Hb_001104_130 Hb_003994_300 Hb_003994_300 Hb_007477_050--Hb_003994_300 Hb_002400_320 Hb_002400_320 Hb_007477_050--Hb_002400_320 Hb_009661_030 Hb_009661_030 Hb_007477_050--Hb_009661_030 Hb_002154_110 Hb_002154_110 Hb_003103_010--Hb_002154_110 Hb_008642_030 Hb_008642_030 Hb_003103_010--Hb_008642_030 Hb_008206_100 Hb_008206_100 Hb_003103_010--Hb_008206_100 Hb_006573_290 Hb_006573_290 Hb_003103_010--Hb_006573_290 Hb_011249_020 Hb_011249_020 Hb_003103_010--Hb_011249_020 Hb_029920_060 Hb_029920_060 Hb_000175_260--Hb_029920_060 Hb_000254_140 Hb_000254_140 Hb_000175_260--Hb_000254_140 Hb_000175_260--Hb_000345_080 Hb_000742_030 Hb_000742_030 Hb_000175_260--Hb_000742_030 Hb_000345_080--Hb_000742_030 Hb_020805_140 Hb_020805_140 Hb_000345_080--Hb_020805_140 Hb_000345_080--Hb_001584_240 Hb_003304_110 Hb_003304_110 Hb_000345_080--Hb_003304_110 Hb_001799_200 Hb_001799_200 Hb_006153_030--Hb_001799_200 Hb_007943_200 Hb_007943_200 Hb_006153_030--Hb_007943_200 Hb_005694_020 Hb_005694_020 Hb_006153_030--Hb_005694_020 Hb_000016_060 Hb_000016_060 Hb_006153_030--Hb_000016_060 Hb_002735_050 Hb_002735_050 Hb_006153_030--Hb_002735_050 Hb_006153_030--Hb_008642_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.57355 0.232922 0.563254 4.359 0.298015 1.18533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76379 1.94025 0.159005 0.762885 2.63546

CAGE analysis