Hb_000295_010

Information

Type -
Description -
Location Contig295: 4959-12621
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID M5WLY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000295_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_003238_030 0.2219177366 - - hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
3 Hb_005389_110 0.2616889172 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
4 Hb_018344_010 0.2716954762 - - PREDICTED: endochitinase 2-like [Populus euphratica]
5 Hb_000380_200 0.2721976545 - - -
6 Hb_116125_010 0.2789721752 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Citrus sinensis]
7 Hb_003656_120 0.2870539067 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
8 Hb_000402_010 0.3004700749 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
9 Hb_000101_210 0.3019822386 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
10 Hb_004631_160 0.305999343 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
11 Hb_000445_300 0.3073498284 - - PREDICTED: wall-associated receptor kinase 5-like [Eucalyptus grandis]
12 Hb_000189_420 0.3079669189 - - PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
13 Hb_000640_150 0.3086651427 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
14 Hb_006810_070 0.3102173781 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_011639_010 0.3146794953 - - -
16 Hb_000504_090 0.3152278756 - - PREDICTED: titin isoform X10 [Jatropha curcas]
17 Hb_029510_010 0.3174717426 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
18 Hb_105085_010 0.3195347552 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
19 Hb_003534_040 0.3235068819 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
20 Hb_007101_220 0.3259764742 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000295_010 Hb_000295_010 Hb_003238_030 Hb_003238_030 Hb_000295_010--Hb_003238_030 Hb_005389_110 Hb_005389_110 Hb_000295_010--Hb_005389_110 Hb_018344_010 Hb_018344_010 Hb_000295_010--Hb_018344_010 Hb_000380_200 Hb_000380_200 Hb_000295_010--Hb_000380_200 Hb_116125_010 Hb_116125_010 Hb_000295_010--Hb_116125_010 Hb_003656_120 Hb_003656_120 Hb_000295_010--Hb_003656_120 Hb_003238_030--Hb_000380_200 Hb_178884_010 Hb_178884_010 Hb_003238_030--Hb_178884_010 Hb_000189_420 Hb_000189_420 Hb_003238_030--Hb_000189_420 Hb_006810_070 Hb_006810_070 Hb_003238_030--Hb_006810_070 Hb_000640_150 Hb_000640_150 Hb_003238_030--Hb_000640_150 Hb_005389_110--Hb_018344_010 Hb_000270_210 Hb_000270_210 Hb_005389_110--Hb_000270_210 Hb_003929_060 Hb_003929_060 Hb_005389_110--Hb_003929_060 Hb_000402_010 Hb_000402_010 Hb_005389_110--Hb_000402_010 Hb_002735_040 Hb_002735_040 Hb_005389_110--Hb_002735_040 Hb_005389_110--Hb_000640_150 Hb_003534_040 Hb_003534_040 Hb_018344_010--Hb_003534_040 Hb_018344_010--Hb_116125_010 Hb_018344_010--Hb_000270_210 Hb_105085_010 Hb_105085_010 Hb_018344_010--Hb_105085_010 Hb_001632_010 Hb_001632_010 Hb_018344_010--Hb_001632_010 Hb_001678_020 Hb_001678_020 Hb_000380_200--Hb_001678_020 Hb_000103_360 Hb_000103_360 Hb_000380_200--Hb_000103_360 Hb_000384_040 Hb_000384_040 Hb_000380_200--Hb_000384_040 Hb_002299_050 Hb_002299_050 Hb_000380_200--Hb_002299_050 Hb_116125_010--Hb_000270_210 Hb_002259_040 Hb_002259_040 Hb_116125_010--Hb_002259_040 Hb_116125_010--Hb_105085_010 Hb_002232_150 Hb_002232_150 Hb_116125_010--Hb_002232_150 Hb_116125_010--Hb_005389_110 Hb_009848_030 Hb_009848_030 Hb_003656_120--Hb_009848_030 Hb_000504_090 Hb_000504_090 Hb_003656_120--Hb_000504_090 Hb_005510_010 Hb_005510_010 Hb_003656_120--Hb_005510_010 Hb_001396_260 Hb_001396_260 Hb_003656_120--Hb_001396_260 Hb_011639_010 Hb_011639_010 Hb_003656_120--Hb_011639_010 Hb_000032_310 Hb_000032_310 Hb_003656_120--Hb_000032_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00615876 0.00506807 0 0 0.0115268 0.00569534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00871481 0

CAGE analysis