Hb_000295_080

Information

Type -
Description -
Location Contig295: 103717-110033
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12220g
description POPTRDRAFT_825335; kinase family protein
nr
ID XP_012087882.1
description PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
swissprot
ID C0LGG8
description Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1
trembl
ID A0A067JWS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25029 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30844: 105247-108009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000295_080 0.0 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
2 Hb_001049_110 0.0854876648 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_002374_240 0.0895605421 - - nucellin, putative [Ricinus communis]
4 Hb_000184_170 0.0919422004 - - hypothetical protein RCOM_1213430 [Ricinus communis]
5 Hb_000556_090 0.0927042923 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
6 Hb_001482_040 0.0999288973 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000288_030 0.1017126651 - - PREDICTED: syntaxin-32 [Jatropha curcas]
8 Hb_001971_010 0.102055241 - - F23N19.4 [Arabidopsis thaliana]
9 Hb_004108_160 0.1022107229 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
10 Hb_002235_250 0.1039171247 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
11 Hb_001902_030 0.1040699597 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
12 Hb_091296_010 0.1051632657 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_000137_040 0.1051844826 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
14 Hb_000061_210 0.1066965724 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
15 Hb_001584_200 0.1067251476 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
16 Hb_000066_080 0.1074865759 - - PREDICTED: mRNA cap guanine-N7 methyltransferase 2 isoform X2 [Jatropha curcas]
17 Hb_005291_050 0.1077603542 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
18 Hb_003153_010 0.1088906521 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
19 Hb_005496_140 0.1091117632 - - conserved hypothetical protein [Ricinus communis]
20 Hb_024128_020 0.1091166854 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000295_080 Hb_000295_080 Hb_001049_110 Hb_001049_110 Hb_000295_080--Hb_001049_110 Hb_002374_240 Hb_002374_240 Hb_000295_080--Hb_002374_240 Hb_000184_170 Hb_000184_170 Hb_000295_080--Hb_000184_170 Hb_000556_090 Hb_000556_090 Hb_000295_080--Hb_000556_090 Hb_001482_040 Hb_001482_040 Hb_000295_080--Hb_001482_040 Hb_000288_030 Hb_000288_030 Hb_000295_080--Hb_000288_030 Hb_015941_020 Hb_015941_020 Hb_001049_110--Hb_015941_020 Hb_000061_210 Hb_000061_210 Hb_001049_110--Hb_000061_210 Hb_005686_090 Hb_005686_090 Hb_001049_110--Hb_005686_090 Hb_018133_090 Hb_018133_090 Hb_001049_110--Hb_018133_090 Hb_001049_110--Hb_000556_090 Hb_000200_030 Hb_000200_030 Hb_002374_240--Hb_000200_030 Hb_002374_240--Hb_000184_170 Hb_000224_160 Hb_000224_160 Hb_002374_240--Hb_000224_160 Hb_001584_200 Hb_001584_200 Hb_002374_240--Hb_001584_200 Hb_000181_240 Hb_000181_240 Hb_002374_240--Hb_000181_240 Hb_003153_010 Hb_003153_010 Hb_000184_170--Hb_003153_010 Hb_000346_060 Hb_000346_060 Hb_000184_170--Hb_000346_060 Hb_001700_010 Hb_001700_010 Hb_000184_170--Hb_001700_010 Hb_008959_010 Hb_008959_010 Hb_000184_170--Hb_008959_010 Hb_022693_140 Hb_022693_140 Hb_000184_170--Hb_022693_140 Hb_001279_030 Hb_001279_030 Hb_000184_170--Hb_001279_030 Hb_004108_160 Hb_004108_160 Hb_000556_090--Hb_004108_160 Hb_004052_170 Hb_004052_170 Hb_000556_090--Hb_004052_170 Hb_000556_090--Hb_003153_010 Hb_011228_010 Hb_011228_010 Hb_000556_090--Hb_011228_010 Hb_001818_100 Hb_001818_100 Hb_000556_090--Hb_001818_100 Hb_000340_230 Hb_000340_230 Hb_000556_090--Hb_000340_230 Hb_002304_040 Hb_002304_040 Hb_001482_040--Hb_002304_040 Hb_000352_120 Hb_000352_120 Hb_001482_040--Hb_000352_120 Hb_000370_020 Hb_000370_020 Hb_001482_040--Hb_000370_020 Hb_090051_030 Hb_090051_030 Hb_001482_040--Hb_090051_030 Hb_027380_220 Hb_027380_220 Hb_001482_040--Hb_027380_220 Hb_000928_070 Hb_000928_070 Hb_000288_030--Hb_000928_070 Hb_004109_220 Hb_004109_220 Hb_000288_030--Hb_004109_220 Hb_000003_230 Hb_000003_230 Hb_000288_030--Hb_000003_230 Hb_000925_130 Hb_000925_130 Hb_000288_030--Hb_000925_130 Hb_003582_060 Hb_003582_060 Hb_000288_030--Hb_003582_060 Hb_012022_040 Hb_012022_040 Hb_000288_030--Hb_012022_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.0159 1.73068 3.10506 4.11053 3.58072 4.16578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.57064 4.908 5.79143 1.92963 5.77805

CAGE analysis