Hb_000295_150

Information

Type -
Description -
Location Contig295: 177273-178235
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID XP_012065700.1
description PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067L8J4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16860 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance protein rga1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000295_150 0.0 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
2 Hb_007040_020 0.0008015433 - - -
3 Hb_003914_040 0.0008091008 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
4 Hb_000125_050 0.0045206607 - - -
5 Hb_000494_140 0.0060790098 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
6 Hb_000039_130 0.0081957733 - - -
7 Hb_053709_020 0.010155591 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_184500_020 0.0102574206 - - -
9 Hb_023930_010 0.0112438812 - - hypothetical protein RCOM_0641040 [Ricinus communis]
10 Hb_008686_050 0.0129068414 - - -
11 Hb_000032_110 0.0130927863 - - nadhp hc toxin reductase, putative [Ricinus communis]
12 Hb_002918_100 0.0132117847 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
13 Hb_001689_060 0.0172051181 - - PREDICTED: uncharacterized protein LOC103846154 [Brassica rapa]
14 Hb_000049_320 0.0177138947 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
15 Hb_003486_040 0.0186590466 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
16 Hb_000373_090 0.0189990903 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]
17 Hb_000733_140 0.0195771037 - - PREDICTED: ras-related protein Rab2BV-like [Jatropha curcas]
18 Hb_000834_120 0.0203841919 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
19 Hb_004881_090 0.0228646272 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
20 Hb_001343_070 0.0230894554 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000295_150 Hb_000295_150 Hb_007040_020 Hb_007040_020 Hb_000295_150--Hb_007040_020 Hb_003914_040 Hb_003914_040 Hb_000295_150--Hb_003914_040 Hb_000125_050 Hb_000125_050 Hb_000295_150--Hb_000125_050 Hb_000494_140 Hb_000494_140 Hb_000295_150--Hb_000494_140 Hb_000039_130 Hb_000039_130 Hb_000295_150--Hb_000039_130 Hb_053709_020 Hb_053709_020 Hb_000295_150--Hb_053709_020 Hb_007040_020--Hb_003914_040 Hb_007040_020--Hb_000125_050 Hb_007040_020--Hb_000494_140 Hb_007040_020--Hb_000039_130 Hb_007040_020--Hb_053709_020 Hb_003914_040--Hb_000125_050 Hb_003914_040--Hb_000494_140 Hb_003914_040--Hb_000039_130 Hb_003914_040--Hb_053709_020 Hb_000125_050--Hb_000494_140 Hb_000125_050--Hb_000039_130 Hb_000125_050--Hb_053709_020 Hb_000494_140--Hb_000039_130 Hb_000494_140--Hb_053709_020 Hb_184500_020 Hb_184500_020 Hb_000494_140--Hb_184500_020 Hb_023930_010 Hb_023930_010 Hb_000494_140--Hb_023930_010 Hb_000039_130--Hb_053709_020 Hb_000039_130--Hb_184500_020 Hb_000039_130--Hb_023930_010 Hb_000032_110 Hb_000032_110 Hb_000039_130--Hb_000032_110 Hb_053709_020--Hb_184500_020 Hb_053709_020--Hb_023930_010 Hb_053709_020--Hb_000032_110 Hb_002918_100 Hb_002918_100 Hb_053709_020--Hb_002918_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0694944 0.191564 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis