Hb_000296_060

Information

Type -
Description -
Location Contig296: 110831-114811
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000296_060 0.0 - - -
2 Hb_187513_010 0.108156474 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
3 Hb_002571_090 0.1287208308 - - -
4 Hb_069783_020 0.1328888758 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
5 Hb_003551_030 0.1352906363 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
6 Hb_000205_340 0.1397422977 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
7 Hb_012424_010 0.1473043261 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_001987_010 0.1665889493 - - -
9 Hb_000276_050 0.1748511224 - - -
10 Hb_000574_550 0.1801110435 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
11 Hb_001693_040 0.2119116669 - - -
12 Hb_003226_290 0.2183218115 - - catalytic, putative [Ricinus communis]
13 Hb_000065_050 0.2365064881 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_000446_060 0.2614665904 - - -
15 Hb_025311_020 0.2654090495 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
16 Hb_143874_010 0.2663902858 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
17 Hb_177179_010 0.2722687214 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
18 Hb_005007_040 0.2733322715 - - hypothetical protein VITISV_032357 [Vitis vinifera]
19 Hb_067769_010 0.2807025735 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
20 Hb_004785_010 0.2844948059 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_000296_060 Hb_000296_060 Hb_187513_010 Hb_187513_010 Hb_000296_060--Hb_187513_010 Hb_002571_090 Hb_002571_090 Hb_000296_060--Hb_002571_090 Hb_069783_020 Hb_069783_020 Hb_000296_060--Hb_069783_020 Hb_003551_030 Hb_003551_030 Hb_000296_060--Hb_003551_030 Hb_000205_340 Hb_000205_340 Hb_000296_060--Hb_000205_340 Hb_012424_010 Hb_012424_010 Hb_000296_060--Hb_012424_010 Hb_187513_010--Hb_069783_020 Hb_000574_550 Hb_000574_550 Hb_187513_010--Hb_000574_550 Hb_187513_010--Hb_002571_090 Hb_187513_010--Hb_012424_010 Hb_187513_010--Hb_003551_030 Hb_002571_090--Hb_000205_340 Hb_000065_050 Hb_000065_050 Hb_002571_090--Hb_000065_050 Hb_002571_090--Hb_000574_550 Hb_002571_090--Hb_003551_030 Hb_069783_020--Hb_003551_030 Hb_069783_020--Hb_012424_010 Hb_001987_010 Hb_001987_010 Hb_069783_020--Hb_001987_010 Hb_000276_050 Hb_000276_050 Hb_069783_020--Hb_000276_050 Hb_003551_030--Hb_001987_010 Hb_001693_040 Hb_001693_040 Hb_003551_030--Hb_001693_040 Hb_003551_030--Hb_000205_340 Hb_003551_030--Hb_012424_010 Hb_000205_340--Hb_001987_010 Hb_000205_340--Hb_012424_010 Hb_000205_340--Hb_001693_040 Hb_012424_010--Hb_001987_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.268696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 16.9633 3.45242 3.41189

CAGE analysis