Hb_000297_020

Information

Type -
Description -
Location Contig297: 29376-32123
Sequence    

Annotation

kegg
ID rcu:RCOM_1046460
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012076982.1
description PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
swissprot
ID Q9CAJ0
description Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1
trembl
ID A0A067KNK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07441 PE=3 SV=1
Gene Ontology
ID GO:0004722
description abscisic insensitive 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31084: 29429-31995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000297_020 0.0 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
2 Hb_017170_030 0.1350327929 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
3 Hb_007153_040 0.1524143344 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
4 Hb_105602_010 0.1539927905 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
5 Hb_004208_130 0.1632289568 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
6 Hb_162275_020 0.1652940385 - - phosphate transporter [Manihot esculenta]
7 Hb_000614_170 0.1729607175 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
8 Hb_000621_020 0.173622502 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
9 Hb_004079_080 0.1827209887 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
10 Hb_004064_010 0.1849733859 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
11 Hb_001049_020 0.1875738115 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001623_160 0.1920221268 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
13 Hb_000732_210 0.1924558134 - - hexose transporter 1 [Hevea brasiliensis]
14 Hb_004931_100 0.1933411271 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
15 Hb_003972_080 0.1935108871 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
16 Hb_006538_190 0.1974474853 - - PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Jatropha curcas]
17 Hb_002374_380 0.1975655219 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
18 Hb_002217_230 0.2020402417 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
19 Hb_005873_010 0.2022777588 - - cysteine desulfurylase, putative [Ricinus communis]
20 Hb_001332_040 0.2023228168 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000297_020 Hb_000297_020 Hb_017170_030 Hb_017170_030 Hb_000297_020--Hb_017170_030 Hb_007153_040 Hb_007153_040 Hb_000297_020--Hb_007153_040 Hb_105602_010 Hb_105602_010 Hb_000297_020--Hb_105602_010 Hb_004208_130 Hb_004208_130 Hb_000297_020--Hb_004208_130 Hb_162275_020 Hb_162275_020 Hb_000297_020--Hb_162275_020 Hb_000614_170 Hb_000614_170 Hb_000297_020--Hb_000614_170 Hb_006538_190 Hb_006538_190 Hb_017170_030--Hb_006538_190 Hb_017170_030--Hb_162275_020 Hb_017170_030--Hb_000614_170 Hb_000723_170 Hb_000723_170 Hb_017170_030--Hb_000723_170 Hb_017170_030--Hb_007153_040 Hb_004064_010 Hb_004064_010 Hb_007153_040--Hb_004064_010 Hb_007153_040--Hb_105602_010 Hb_000320_300 Hb_000320_300 Hb_007153_040--Hb_000320_300 Hb_003266_100 Hb_003266_100 Hb_007153_040--Hb_003266_100 Hb_009687_010 Hb_009687_010 Hb_105602_010--Hb_009687_010 Hb_105602_010--Hb_004064_010 Hb_000621_020 Hb_000621_020 Hb_105602_010--Hb_000621_020 Hb_105602_010--Hb_003266_100 Hb_001332_040 Hb_001332_040 Hb_105602_010--Hb_001332_040 Hb_000103_270 Hb_000103_270 Hb_105602_010--Hb_000103_270 Hb_000907_170 Hb_000907_170 Hb_004208_130--Hb_000907_170 Hb_145084_010 Hb_145084_010 Hb_004208_130--Hb_145084_010 Hb_004931_100 Hb_004931_100 Hb_004208_130--Hb_004931_100 Hb_002138_010 Hb_002138_010 Hb_004208_130--Hb_002138_010 Hb_002609_060 Hb_002609_060 Hb_004208_130--Hb_002609_060 Hb_162275_020--Hb_006538_190 Hb_162275_020--Hb_000614_170 Hb_000732_210 Hb_000732_210 Hb_162275_020--Hb_000732_210 Hb_000005_400 Hb_000005_400 Hb_162275_020--Hb_000005_400 Hb_001699_200 Hb_001699_200 Hb_000614_170--Hb_001699_200 Hb_000614_170--Hb_001332_040 Hb_002217_230 Hb_002217_230 Hb_000614_170--Hb_002217_230 Hb_028487_170 Hb_028487_170 Hb_000614_170--Hb_028487_170 Hb_029385_010 Hb_029385_010 Hb_000614_170--Hb_029385_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91107 5.08466 1.57874 7.61464 1.02692 1.65111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.28661 15.2022 13.5198 20.9492 1.72804

CAGE analysis