Hb_000297_100

Information

Type transcription factor
Description TF Family: NAC
Location Contig297: 128702-130820
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07690g
description POPTRDRAFT_576564; hypothetical protein
nr
ID AGL39694.1
description NAC transcription factor 038 [Jatropha curcas]
swissprot
ID Q9FMR3
description NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1
trembl
ID R4NFV0
description NAC transcription factor 038 OS=Jatropha curcas GN=JCGZ_06792 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 90-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000297_100 0.0 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
2 Hb_002284_020 0.1324709525 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
3 Hb_000307_110 0.1394567294 - - hypothetical protein JCGZ_08160 [Jatropha curcas]
4 Hb_005545_080 0.1424021284 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
5 Hb_001568_060 0.146270596 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
6 Hb_141990_050 0.1499275527 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
7 Hb_004712_140 0.1518247627 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
8 Hb_041290_030 0.1595989801 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
9 Hb_000331_710 0.1598500955 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_000322_120 0.1609596083 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
11 Hb_008078_020 0.1685045413 - - hypothetical protein JCGZ_01297 [Jatropha curcas]
12 Hb_039650_030 0.1724149656 - - hypothetical protein RCOM_2128750 [Ricinus communis]
13 Hb_009189_010 0.1735005258 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
14 Hb_000359_080 0.1774703547 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
15 Hb_010962_030 0.1793369035 - - kinase, putative [Ricinus communis]
16 Hb_007433_020 0.1795229625 - - hypothetical protein VITISV_005320 [Vitis vinifera]
17 Hb_000175_250 0.1828810281 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
18 Hb_000247_150 0.1835530072 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
19 Hb_007328_010 0.184943073 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
20 Hb_009476_010 0.185833916 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]

Gene co-expression network

sample Hb_000297_100 Hb_000297_100 Hb_002284_020 Hb_002284_020 Hb_000297_100--Hb_002284_020 Hb_000307_110 Hb_000307_110 Hb_000297_100--Hb_000307_110 Hb_005545_080 Hb_005545_080 Hb_000297_100--Hb_005545_080 Hb_001568_060 Hb_001568_060 Hb_000297_100--Hb_001568_060 Hb_141990_050 Hb_141990_050 Hb_000297_100--Hb_141990_050 Hb_004712_140 Hb_004712_140 Hb_000297_100--Hb_004712_140 Hb_002272_140 Hb_002272_140 Hb_002284_020--Hb_002272_140 Hb_000473_080 Hb_000473_080 Hb_002284_020--Hb_000473_080 Hb_000322_120 Hb_000322_120 Hb_002284_020--Hb_000322_120 Hb_174380_010 Hb_174380_010 Hb_002284_020--Hb_174380_010 Hb_000003_420 Hb_000003_420 Hb_002284_020--Hb_000003_420 Hb_021596_070 Hb_021596_070 Hb_002284_020--Hb_021596_070 Hb_000181_080 Hb_000181_080 Hb_000307_110--Hb_000181_080 Hb_000307_110--Hb_002284_020 Hb_003086_050 Hb_003086_050 Hb_000307_110--Hb_003086_050 Hb_041290_030 Hb_041290_030 Hb_000307_110--Hb_041290_030 Hb_000103_400 Hb_000103_400 Hb_000307_110--Hb_000103_400 Hb_005545_080--Hb_004712_140 Hb_000117_110 Hb_000117_110 Hb_005545_080--Hb_000117_110 Hb_004924_030 Hb_004924_030 Hb_005545_080--Hb_004924_030 Hb_010327_010 Hb_010327_010 Hb_005545_080--Hb_010327_010 Hb_001677_130 Hb_001677_130 Hb_005545_080--Hb_001677_130 Hb_028841_020 Hb_028841_020 Hb_001568_060--Hb_028841_020 Hb_025030_010 Hb_025030_010 Hb_001568_060--Hb_025030_010 Hb_007433_020 Hb_007433_020 Hb_001568_060--Hb_007433_020 Hb_108802_010 Hb_108802_010 Hb_001568_060--Hb_108802_010 Hb_005882_020 Hb_005882_020 Hb_001568_060--Hb_005882_020 Hb_001568_060--Hb_000322_120 Hb_007328_010 Hb_007328_010 Hb_141990_050--Hb_007328_010 Hb_000522_120 Hb_000522_120 Hb_141990_050--Hb_000522_120 Hb_009189_010 Hb_009189_010 Hb_141990_050--Hb_009189_010 Hb_002849_030 Hb_002849_030 Hb_141990_050--Hb_002849_030 Hb_073870_020 Hb_073870_020 Hb_141990_050--Hb_073870_020 Hb_005588_010 Hb_005588_010 Hb_141990_050--Hb_005588_010 Hb_004712_140--Hb_041290_030 Hb_004712_140--Hb_010327_010 Hb_000331_710 Hb_000331_710 Hb_004712_140--Hb_000331_710 Hb_004712_140--Hb_021596_070 Hb_000398_200 Hb_000398_200 Hb_004712_140--Hb_000398_200 Hb_004712_140--Hb_001677_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.04446 1.66962 0.8029 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.137481 0.486445 0 0.831735 0.975114

CAGE analysis