Hb_000297_120

Information

Type -
Description -
Location Contig297: 154745-161220
Sequence    

Annotation

kegg
ID rcu:RCOM_0293470
description sorting nexin 3, putative
nr
ID XP_012073004.1
description PREDICTED: sorting nexin 1 [Jatropha curcas]
swissprot
ID Q9FG38
description Sorting nexin 1 OS=Arabidopsis thaliana GN=SNX1 PE=1 SV=1
trembl
ID A0A067KYJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06789 PE=4 SV=1
Gene Ontology
ID GO:0005771
description sorting nexin 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31092: 154989-161176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000297_120 0.0 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
2 Hb_032920_070 0.0704138075 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
3 Hb_000185_220 0.0721518894 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
4 Hb_006683_070 0.0769280628 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
5 Hb_001307_030 0.0772785601 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
6 Hb_006059_010 0.0779817902 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
7 Hb_002660_170 0.0784134408 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
8 Hb_002804_040 0.0811999129 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
9 Hb_185255_010 0.0849567997 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
10 Hb_000309_050 0.0856362179 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
11 Hb_005976_080 0.0874772632 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
12 Hb_025098_010 0.088393639 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_003206_110 0.0898010842 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
14 Hb_000012_310 0.0926140259 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
15 Hb_000060_050 0.0926337295 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
16 Hb_000946_110 0.092665392 - - GTP cyclohydrolase I, putative [Ricinus communis]
17 Hb_002392_010 0.095014239 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
18 Hb_011249_020 0.0966403857 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
19 Hb_015675_040 0.0968154798 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
20 Hb_170138_010 0.0970129676 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000297_120 Hb_000297_120 Hb_032920_070 Hb_032920_070 Hb_000297_120--Hb_032920_070 Hb_000185_220 Hb_000185_220 Hb_000297_120--Hb_000185_220 Hb_006683_070 Hb_006683_070 Hb_000297_120--Hb_006683_070 Hb_001307_030 Hb_001307_030 Hb_000297_120--Hb_001307_030 Hb_006059_010 Hb_006059_010 Hb_000297_120--Hb_006059_010 Hb_002660_170 Hb_002660_170 Hb_000297_120--Hb_002660_170 Hb_020390_010 Hb_020390_010 Hb_032920_070--Hb_020390_010 Hb_002110_100 Hb_002110_100 Hb_032920_070--Hb_002110_100 Hb_002392_010 Hb_002392_010 Hb_032920_070--Hb_002392_010 Hb_015057_020 Hb_015057_020 Hb_032920_070--Hb_015057_020 Hb_032920_070--Hb_000185_220 Hb_000185_220--Hb_006059_010 Hb_001195_400 Hb_001195_400 Hb_000185_220--Hb_001195_400 Hb_003206_110 Hb_003206_110 Hb_000185_220--Hb_003206_110 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_001975_150 Hb_001975_150 Hb_000185_220--Hb_001975_150 Hb_185255_010 Hb_185255_010 Hb_006683_070--Hb_185255_010 Hb_015934_120 Hb_015934_120 Hb_006683_070--Hb_015934_120 Hb_001269_190 Hb_001269_190 Hb_006683_070--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_006683_070--Hb_025098_010 Hb_005800_030 Hb_005800_030 Hb_006683_070--Hb_005800_030 Hb_001307_030--Hb_025098_010 Hb_008566_030 Hb_008566_030 Hb_001307_030--Hb_008566_030 Hb_001307_030--Hb_185255_010 Hb_011249_020 Hb_011249_020 Hb_001307_030--Hb_011249_020 Hb_000329_210 Hb_000329_210 Hb_001307_030--Hb_000329_210 Hb_000012_310 Hb_000012_310 Hb_006059_010--Hb_000012_310 Hb_006059_010--Hb_002660_170 Hb_000109_180 Hb_000109_180 Hb_006059_010--Hb_000109_180 Hb_008748_030 Hb_008748_030 Hb_006059_010--Hb_008748_030 Hb_000025_190 Hb_000025_190 Hb_002660_170--Hb_000025_190 Hb_007218_120 Hb_007218_120 Hb_002660_170--Hb_007218_120 Hb_000060_050 Hb_000060_050 Hb_002660_170--Hb_000060_050 Hb_002660_170--Hb_000012_310 Hb_002477_290 Hb_002477_290 Hb_002660_170--Hb_002477_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.38172 7.44486 8.51391 23.7036 5.62973 8.12652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8185 16.143 13.5642 15.8025 23.2768

CAGE analysis