Hb_000297_180

Information

Type -
Description -
Location Contig297: 190688-193850
Sequence    

Annotation

kegg
ID rcu:RCOM_0293390
description Desacetoxyvindoline 4-hydroxylase, putative (EC:1.14.11.20)
nr
ID XP_002530339.1
description Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
swissprot
ID Q9LTH7
description 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1
trembl
ID B9SWH0
description Desacetoxyvindoline 4-hydroxylase, putative OS=Ricinus communis GN=RCOM_0293390 PE=3 SV=1
Gene Ontology
ID GO:0000166
description 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31107: 190707-192395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000297_180 0.0 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
2 Hb_003893_100 0.0808181462 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
3 Hb_004316_130 0.0849990936 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
4 Hb_012368_080 0.0899960897 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
5 Hb_144783_010 0.0947364464 - - glutathione s-transferase, putative [Ricinus communis]
6 Hb_035583_010 0.1020816128 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
7 Hb_002475_070 0.1034827431 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
8 Hb_012779_010 0.1220075329 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
9 Hb_162557_010 0.123071947 - - PREDICTED: uncharacterized protein LOC105634192 [Jatropha curcas]
10 Hb_002521_010 0.1237310536 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
11 Hb_018591_010 0.1238472049 - - kinase, putative [Ricinus communis]
12 Hb_000513_100 0.1250918784 - - germin-like protein GLP, partial [Manihot esculenta]
13 Hb_002747_010 0.1255183342 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
14 Hb_153457_010 0.1258164851 - - Miraculin precursor, putative [Ricinus communis]
15 Hb_000347_530 0.1313729554 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
16 Hb_000797_030 0.1315521638 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
17 Hb_006637_040 0.1342630717 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
18 Hb_002966_030 0.1348312207 - - conserved hypothetical protein [Ricinus communis]
19 Hb_028008_010 0.135366079 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
20 Hb_000614_180 0.1361321019 - - -

Gene co-expression network

sample Hb_000297_180 Hb_000297_180 Hb_003893_100 Hb_003893_100 Hb_000297_180--Hb_003893_100 Hb_004316_130 Hb_004316_130 Hb_000297_180--Hb_004316_130 Hb_012368_080 Hb_012368_080 Hb_000297_180--Hb_012368_080 Hb_144783_010 Hb_144783_010 Hb_000297_180--Hb_144783_010 Hb_035583_010 Hb_035583_010 Hb_000297_180--Hb_035583_010 Hb_002475_070 Hb_002475_070 Hb_000297_180--Hb_002475_070 Hb_000797_030 Hb_000797_030 Hb_003893_100--Hb_000797_030 Hb_003097_200 Hb_003097_200 Hb_003893_100--Hb_003097_200 Hb_003893_100--Hb_004316_130 Hb_003893_100--Hb_012368_080 Hb_006637_040 Hb_006637_040 Hb_003893_100--Hb_006637_040 Hb_004316_130--Hb_144783_010 Hb_004316_130--Hb_000797_030 Hb_004316_130--Hb_003097_200 Hb_004316_130--Hb_002475_070 Hb_012368_080--Hb_006637_040 Hb_018591_010 Hb_018591_010 Hb_012368_080--Hb_018591_010 Hb_098030_010 Hb_098030_010 Hb_012368_080--Hb_098030_010 Hb_002301_420 Hb_002301_420 Hb_012368_080--Hb_002301_420 Hb_144783_010--Hb_002475_070 Hb_000200_180 Hb_000200_180 Hb_144783_010--Hb_000200_180 Hb_002521_010 Hb_002521_010 Hb_144783_010--Hb_002521_010 Hb_144783_010--Hb_003893_100 Hb_035583_010--Hb_004316_130 Hb_012532_020 Hb_012532_020 Hb_035583_010--Hb_012532_020 Hb_003392_030 Hb_003392_030 Hb_035583_010--Hb_003392_030 Hb_148435_010 Hb_148435_010 Hb_035583_010--Hb_148435_010 Hb_000487_150 Hb_000487_150 Hb_035583_010--Hb_000487_150 Hb_002475_070--Hb_003893_100 Hb_002475_070--Hb_000797_030 Hb_002475_070--Hb_002521_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0136475 0.351068 3.40886 13.1198 0.0308885 0.010698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 53.3941 1.65868

CAGE analysis