Hb_000297_200

Information

Type -
Description -
Location Contig297: 224209-226116
Sequence    

Annotation

kegg
ID vvi:100246071
description pentatricopeptide repeat-containing protein At2g33760-like
nr
ID XP_010654106.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
swissprot
ID P93011
description Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
trembl
ID A0A0D2MF68
description Gossypium raimondii chromosome 2, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_002G238700 PE=4 SV=1
Gene Ontology
ID GO:0005576
description pentatricopeptide repeat-containing protein at2g33760-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000297_200 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
2 Hb_000997_400 0.0582921688 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
3 Hb_000457_150 0.0713239311 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
4 Hb_029584_130 0.0741874768 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
5 Hb_000935_050 0.0823496575 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
6 Hb_000007_150 0.0824989549 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
7 Hb_000059_220 0.0873684361 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
8 Hb_000019_130 0.0889097668 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
9 Hb_000307_030 0.0892865362 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
10 Hb_010710_040 0.0907313439 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000179_210 0.0920376517 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
12 Hb_006501_040 0.0924469951 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
13 Hb_006922_110 0.0930188178 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
14 Hb_005147_090 0.0931815031 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
15 Hb_000193_290 0.0953312875 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
16 Hb_001123_230 0.0959787449 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
17 Hb_000614_230 0.0970166015 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
18 Hb_003266_130 0.0975133193 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
19 Hb_178968_110 0.0979782542 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
20 Hb_004128_180 0.0984760008 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000297_200 Hb_000297_200 Hb_000997_400 Hb_000997_400 Hb_000297_200--Hb_000997_400 Hb_000457_150 Hb_000457_150 Hb_000297_200--Hb_000457_150 Hb_029584_130 Hb_029584_130 Hb_000297_200--Hb_029584_130 Hb_000935_050 Hb_000935_050 Hb_000297_200--Hb_000935_050 Hb_000007_150 Hb_000007_150 Hb_000297_200--Hb_000007_150 Hb_000059_220 Hb_000059_220 Hb_000297_200--Hb_000059_220 Hb_000997_400--Hb_000059_220 Hb_003018_190 Hb_003018_190 Hb_000997_400--Hb_003018_190 Hb_000482_010 Hb_000482_010 Hb_000997_400--Hb_000482_010 Hb_000997_400--Hb_000457_150 Hb_010710_040 Hb_010710_040 Hb_000997_400--Hb_010710_040 Hb_005532_060 Hb_005532_060 Hb_000457_150--Hb_005532_060 Hb_178968_110 Hb_178968_110 Hb_000457_150--Hb_178968_110 Hb_055062_030 Hb_055062_030 Hb_000457_150--Hb_055062_030 Hb_000567_260 Hb_000567_260 Hb_000457_150--Hb_000567_260 Hb_001159_100 Hb_001159_100 Hb_029584_130--Hb_001159_100 Hb_029584_130--Hb_000007_150 Hb_034585_060 Hb_034585_060 Hb_029584_130--Hb_034585_060 Hb_000754_060 Hb_000754_060 Hb_029584_130--Hb_000754_060 Hb_000427_050 Hb_000427_050 Hb_029584_130--Hb_000427_050 Hb_119600_040 Hb_119600_040 Hb_000935_050--Hb_119600_040 Hb_007075_050 Hb_007075_050 Hb_000935_050--Hb_007075_050 Hb_000019_130 Hb_000019_130 Hb_000935_050--Hb_000019_130 Hb_027472_170 Hb_027472_170 Hb_000935_050--Hb_027472_170 Hb_007747_200 Hb_007747_200 Hb_000935_050--Hb_007747_200 Hb_000007_150--Hb_000019_130 Hb_000000_250 Hb_000000_250 Hb_000007_150--Hb_000000_250 Hb_000007_150--Hb_034585_060 Hb_000007_150--Hb_000427_050 Hb_006501_040 Hb_006501_040 Hb_000059_220--Hb_006501_040 Hb_000179_210 Hb_000179_210 Hb_000059_220--Hb_000179_210 Hb_000059_220--Hb_178968_110 Hb_000614_230 Hb_000614_230 Hb_000059_220--Hb_000614_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.91572 3.75881 0.902714 2.11824 3.57658 6.08918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.51856 6.66145 11.2691 2.17478 1.18466

CAGE analysis