Hb_000297_220

Information

Type -
Description -
Location Contig297: 238669-239055
Sequence    

Annotation

kegg
ID tcc:TCM_022627
description SAUR family protein
nr
ID XP_007027790.1
description SAUR family protein [Theobroma cacao]
swissprot
ID Q9LTV3
description Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana GN=SAUR72 PE=2 SV=1
trembl
ID A0A061EV58
description SAUR family protein OS=Theobroma cacao GN=TCM_022627 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000297_220 0.0 - - SAUR family protein [Theobroma cacao]
2 Hb_004631_030 0.0661749559 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
3 Hb_012516_030 0.0751584977 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
4 Hb_000956_060 0.0778688286 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
5 Hb_041063_010 0.1123172505 - - Disease resistance protein RFL1, putative [Ricinus communis]
6 Hb_002054_090 0.1130198806 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
7 Hb_000306_050 0.1165866922 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
8 Hb_131417_010 0.1182241164 - - hypothetical protein POPTR_0011s066602g, partial [Populus trichocarpa]
9 Hb_000032_330 0.1203933331 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000836_250 0.1227014351 - - hypothetical protein VITISV_022299 [Vitis vinifera]
11 Hb_000676_130 0.1272613058 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
12 Hb_000566_170 0.1316560215 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
13 Hb_000521_350 0.1327922049 - - unnamed protein product [Vitis vinifera]
14 Hb_000975_130 0.1334724968 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
15 Hb_000429_030 0.134259998 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_000510_210 0.1381231486 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
17 Hb_020805_110 0.1390514158 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
18 Hb_006314_020 0.1432321704 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
19 Hb_003371_040 0.1450892875 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
20 Hb_003811_050 0.1452300745 - - hypothetical protein JCGZ_01310 [Jatropha curcas]

Gene co-expression network

sample Hb_000297_220 Hb_000297_220 Hb_004631_030 Hb_004631_030 Hb_000297_220--Hb_004631_030 Hb_012516_030 Hb_012516_030 Hb_000297_220--Hb_012516_030 Hb_000956_060 Hb_000956_060 Hb_000297_220--Hb_000956_060 Hb_041063_010 Hb_041063_010 Hb_000297_220--Hb_041063_010 Hb_002054_090 Hb_002054_090 Hb_000297_220--Hb_002054_090 Hb_000306_050 Hb_000306_050 Hb_000297_220--Hb_000306_050 Hb_004631_030--Hb_012516_030 Hb_000566_170 Hb_000566_170 Hb_004631_030--Hb_000566_170 Hb_004631_030--Hb_000956_060 Hb_000510_210 Hb_000510_210 Hb_004631_030--Hb_000510_210 Hb_004631_030--Hb_002054_090 Hb_012516_030--Hb_000956_060 Hb_012516_030--Hb_000566_170 Hb_012516_030--Hb_000510_210 Hb_000975_130 Hb_000975_130 Hb_012516_030--Hb_000975_130 Hb_000956_060--Hb_000975_130 Hb_003811_050 Hb_003811_050 Hb_000956_060--Hb_003811_050 Hb_000676_130 Hb_000676_130 Hb_000956_060--Hb_000676_130 Hb_000032_330 Hb_000032_330 Hb_041063_010--Hb_000032_330 Hb_060236_010 Hb_060236_010 Hb_041063_010--Hb_060236_010 Hb_000098_210 Hb_000098_210 Hb_041063_010--Hb_000098_210 Hb_004241_050 Hb_004241_050 Hb_041063_010--Hb_004241_050 Hb_041063_010--Hb_002054_090 Hb_131417_010 Hb_131417_010 Hb_041063_010--Hb_131417_010 Hb_002054_090--Hb_060236_010 Hb_002054_090--Hb_004241_050 Hb_000059_110 Hb_000059_110 Hb_002054_090--Hb_000059_110 Hb_014115_010 Hb_014115_010 Hb_000306_050--Hb_014115_010 Hb_020805_110 Hb_020805_110 Hb_000306_050--Hb_020805_110 Hb_001596_030 Hb_001596_030 Hb_000306_050--Hb_001596_030 Hb_009711_040 Hb_009711_040 Hb_000306_050--Hb_009711_040 Hb_000836_250 Hb_000836_250 Hb_000306_050--Hb_000836_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.157763 0.0706506 0.680305 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.432118 0

CAGE analysis