Hb_000297_230

Information

Type -
Description -
Location Contig297: 245613-254039
Sequence    

Annotation

kegg
ID rcu:RCOM_0293010
description small nuclear ribonucleoprotein G, putative
nr
ID XP_011004216.1
description PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
swissprot
ID O82221
description Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 PE=2 SV=1
trembl
ID A9PB05
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0005730
description probable small nuclear ribonucleoprotein g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31115: 250849-254035
cDNA
(Sanger)
(ID:Location)		 014_F19.ab1: 250851-253893 , 022_G01.ab1: 250929-253893 , 023_B11.ab1: 250867-253893 , 030_G03.ab1: 250867-253893 , 034_E08.ab1: 250849-253913 , 037_H03.ab1: 250851-253893 , 042_D03.ab1: 250851-253891 , 049_N10.ab1: 250867-253893

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000297_230 0.0 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
2 Hb_003053_010 0.0878959537 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
3 Hb_002768_030 0.0898586668 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
4 Hb_000948_210 0.0906034474 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
5 Hb_002217_050 0.0930518939 - - PREDICTED: uncharacterized protein LOC104607091 isoform X1 [Nelumbo nucifera]
6 Hb_077354_010 0.0998262139 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
7 Hb_003683_110 0.1003476381 - - JHL10I11.3 [Jatropha curcas]
8 Hb_000453_090 0.1021429384 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
9 Hb_003018_120 0.1024203854 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
10 Hb_003058_080 0.1043791226 - - Chaperonin 10 isoform 1 [Theobroma cacao]
11 Hb_006831_130 0.1047511921 - - catalytic, putative [Ricinus communis]
12 Hb_003185_110 0.1058133793 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
13 Hb_000144_080 0.111890691 - - PREDICTED: uncharacterized protein LOC104609774 [Nelumbo nucifera]
14 Hb_000025_230 0.1121148562 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
15 Hb_001300_040 0.1127893609 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
16 Hb_012753_230 0.1133982603 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
17 Hb_004052_020 0.1142038081 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
18 Hb_001780_040 0.1150628975 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
19 Hb_000510_110 0.1156249349 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
20 Hb_006925_040 0.116460638 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_000297_230 Hb_000297_230 Hb_003053_010 Hb_003053_010 Hb_000297_230--Hb_003053_010 Hb_002768_030 Hb_002768_030 Hb_000297_230--Hb_002768_030 Hb_000948_210 Hb_000948_210 Hb_000297_230--Hb_000948_210 Hb_002217_050 Hb_002217_050 Hb_000297_230--Hb_002217_050 Hb_077354_010 Hb_077354_010 Hb_000297_230--Hb_077354_010 Hb_003683_110 Hb_003683_110 Hb_000297_230--Hb_003683_110 Hb_006925_040 Hb_006925_040 Hb_003053_010--Hb_006925_040 Hb_001141_140 Hb_001141_140 Hb_003053_010--Hb_001141_140 Hb_003185_110 Hb_003185_110 Hb_003053_010--Hb_003185_110 Hb_000025_620 Hb_000025_620 Hb_003053_010--Hb_000025_620 Hb_001780_040 Hb_001780_040 Hb_003053_010--Hb_001780_040 Hb_002768_030--Hb_003683_110 Hb_002768_030--Hb_001780_040 Hb_000127_180 Hb_000127_180 Hb_002768_030--Hb_000127_180 Hb_000996_140 Hb_000996_140 Hb_002768_030--Hb_000996_140 Hb_000035_370 Hb_000035_370 Hb_002768_030--Hb_000035_370 Hb_006831_130 Hb_006831_130 Hb_002768_030--Hb_006831_130 Hb_000617_090 Hb_000617_090 Hb_000948_210--Hb_000617_090 Hb_012753_230 Hb_012753_230 Hb_000948_210--Hb_012753_230 Hb_012573_070 Hb_012573_070 Hb_000948_210--Hb_012573_070 Hb_004052_020 Hb_004052_020 Hb_000948_210--Hb_004052_020 Hb_000510_110 Hb_000510_110 Hb_000948_210--Hb_000510_110 Hb_000261_080 Hb_000261_080 Hb_002217_050--Hb_000261_080 Hb_002217_050--Hb_003053_010 Hb_001832_060 Hb_001832_060 Hb_002217_050--Hb_001832_060 Hb_001300_040 Hb_001300_040 Hb_002217_050--Hb_001300_040 Hb_002217_050--Hb_006831_130 Hb_002234_070 Hb_002234_070 Hb_077354_010--Hb_002234_070 Hb_033594_110 Hb_033594_110 Hb_077354_010--Hb_033594_110 Hb_003018_120 Hb_003018_120 Hb_077354_010--Hb_003018_120 Hb_000684_270 Hb_000684_270 Hb_077354_010--Hb_000684_270 Hb_077354_010--Hb_006831_130 Hb_003683_110--Hb_001780_040 Hb_003683_110--Hb_012573_070 Hb_000453_090 Hb_000453_090 Hb_003683_110--Hb_000453_090 Hb_003226_100 Hb_003226_100 Hb_003683_110--Hb_003226_100 Hb_007416_030 Hb_007416_030 Hb_003683_110--Hb_007416_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
197.929 51.4589 199.604 67.6525 108.738 106.239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
329.057 481.414 141.9 52.4691 54.0858

CAGE analysis