Hb_000299_040

Information

Type -
Description -
Location Contig299: 122857-144885
Sequence    

Annotation

kegg
ID rcu:RCOM_0728630
description zinc finger protein, putative
nr
ID XP_012066181.1
description PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
swissprot
ID Q7XA86
description Protein S-acyltransferase 10 OS=Arabidopsis thaliana GN=PAT10 PE=1 SV=1
trembl
ID B9SAK9
description S-acyltransferase OS=Ricinus communis GN=RCOM_0728630 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein s-acyltransferase 10-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31260: 127397-127583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000299_040 0.0 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
2 Hb_001252_100 0.070792667 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
3 Hb_000010_090 0.0771417139 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
4 Hb_000529_160 0.0780461057 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
5 Hb_000053_130 0.081106126 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
6 Hb_033843_010 0.0911543925 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
7 Hb_000883_130 0.0921319596 - - PREDICTED: novel plant SNARE 11 [Jatropha curcas]
8 Hb_001369_180 0.0936644513 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
9 Hb_004182_040 0.0985359453 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
10 Hb_000620_010 0.0988983002 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
11 Hb_003502_080 0.098977777 - - vacuolar protein sorting, putative [Ricinus communis]
12 Hb_003641_050 0.1010626303 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
13 Hb_012092_010 0.1016843508 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
14 Hb_003001_120 0.1024642929 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
15 Hb_003030_070 0.1029164845 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
16 Hb_000365_310 0.1030458515 - - auxin:hydrogen symporter, putative [Ricinus communis]
17 Hb_000230_560 0.1030856657 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
18 Hb_002506_020 0.1036313094 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
19 Hb_005016_170 0.1042143363 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004705_040 0.1057753718 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]

Gene co-expression network

sample Hb_000299_040 Hb_000299_040 Hb_001252_100 Hb_001252_100 Hb_000299_040--Hb_001252_100 Hb_000010_090 Hb_000010_090 Hb_000299_040--Hb_000010_090 Hb_000529_160 Hb_000529_160 Hb_000299_040--Hb_000529_160 Hb_000053_130 Hb_000053_130 Hb_000299_040--Hb_000053_130 Hb_033843_010 Hb_033843_010 Hb_000299_040--Hb_033843_010 Hb_000883_130 Hb_000883_130 Hb_000299_040--Hb_000883_130 Hb_001252_100--Hb_033843_010 Hb_148912_010 Hb_148912_010 Hb_001252_100--Hb_148912_010 Hb_000690_080 Hb_000690_080 Hb_001252_100--Hb_000690_080 Hb_000107_050 Hb_000107_050 Hb_001252_100--Hb_000107_050 Hb_001006_170 Hb_001006_170 Hb_001252_100--Hb_001006_170 Hb_000618_030 Hb_000618_030 Hb_000010_090--Hb_000618_030 Hb_000010_090--Hb_000053_130 Hb_000451_010 Hb_000451_010 Hb_000010_090--Hb_000451_010 Hb_073171_040 Hb_073171_040 Hb_000010_090--Hb_073171_040 Hb_003728_080 Hb_003728_080 Hb_000010_090--Hb_003728_080 Hb_000365_310 Hb_000365_310 Hb_000529_160--Hb_000365_310 Hb_010120_030 Hb_010120_030 Hb_000529_160--Hb_010120_030 Hb_000179_170 Hb_000179_170 Hb_000529_160--Hb_000179_170 Hb_076787_010 Hb_076787_010 Hb_000529_160--Hb_076787_010 Hb_022137_060 Hb_022137_060 Hb_000529_160--Hb_022137_060 Hb_150360_030 Hb_150360_030 Hb_000053_130--Hb_150360_030 Hb_000076_120 Hb_000076_120 Hb_000053_130--Hb_000076_120 Hb_000058_100 Hb_000058_100 Hb_000053_130--Hb_000058_100 Hb_054865_120 Hb_054865_120 Hb_000053_130--Hb_054865_120 Hb_000094_300 Hb_000094_300 Hb_000053_130--Hb_000094_300 Hb_000465_430 Hb_000465_430 Hb_033843_010--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_033843_010--Hb_003502_080 Hb_003058_130 Hb_003058_130 Hb_033843_010--Hb_003058_130 Hb_033843_010--Hb_001006_170 Hb_033153_050 Hb_033153_050 Hb_033843_010--Hb_033153_050 Hb_003392_040 Hb_003392_040 Hb_033843_010--Hb_003392_040 Hb_000883_130--Hb_000010_090 Hb_002749_090 Hb_002749_090 Hb_000883_130--Hb_002749_090 Hb_001348_050 Hb_001348_050 Hb_000883_130--Hb_001348_050 Hb_004837_190 Hb_004837_190 Hb_000883_130--Hb_004837_190 Hb_014720_160 Hb_014720_160 Hb_000883_130--Hb_014720_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.87237 1.06827 4.21529 4.86147 7.0461 8.43392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.43007 4.79524 5.0743 3.05993 2.68206

CAGE analysis