Hb_000300_060

Information

Type -
Description -
Location Contig300: 37475-41133
Sequence    

Annotation

kegg
ID rcu:RCOM_0845220
description hypothetical protein
nr
ID XP_012070353.1
description PREDICTED: F-box protein SKIP24 [Jatropha curcas]
swissprot
ID Q9CAZ0
description F-box protein SKIP24 OS=Arabidopsis thaliana GN=SKIP24 PE=1 SV=2
trembl
ID A0A067KTZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02647 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31536: 37494-40042 , PASA_asmbl_31537: 37938-39955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_060 0.0 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
2 Hb_066182_010 0.0549734397 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
3 Hb_005276_210 0.0589516634 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
4 Hb_003097_150 0.0596836641 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
5 Hb_001571_040 0.062312954 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
6 Hb_002081_130 0.0652755531 - - serine carboxypeptidase, putative [Ricinus communis]
7 Hb_003010_030 0.066340096 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
8 Hb_096563_010 0.0694180953 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
9 Hb_002477_280 0.0703461814 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
10 Hb_002149_020 0.0714218147 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
11 Hb_000853_170 0.0722521708 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
12 Hb_000661_250 0.0727355184 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
13 Hb_000398_180 0.0728388014 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
14 Hb_002391_300 0.0739975014 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
15 Hb_004440_090 0.0742025023 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
16 Hb_005694_110 0.0747516011 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
17 Hb_000051_070 0.0748861673 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
18 Hb_001226_160 0.0754150169 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
19 Hb_001006_140 0.0756531801 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
20 Hb_000085_160 0.076202485 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]

Gene co-expression network

sample Hb_000300_060 Hb_000300_060 Hb_066182_010 Hb_066182_010 Hb_000300_060--Hb_066182_010 Hb_005276_210 Hb_005276_210 Hb_000300_060--Hb_005276_210 Hb_003097_150 Hb_003097_150 Hb_000300_060--Hb_003097_150 Hb_001571_040 Hb_001571_040 Hb_000300_060--Hb_001571_040 Hb_002081_130 Hb_002081_130 Hb_000300_060--Hb_002081_130 Hb_003010_030 Hb_003010_030 Hb_000300_060--Hb_003010_030 Hb_054865_100 Hb_054865_100 Hb_066182_010--Hb_054865_100 Hb_066182_010--Hb_005276_210 Hb_066182_010--Hb_002081_130 Hb_002149_020 Hb_002149_020 Hb_066182_010--Hb_002149_020 Hb_000640_240 Hb_000640_240 Hb_066182_010--Hb_000640_240 Hb_000034_100 Hb_000034_100 Hb_005276_210--Hb_000034_100 Hb_005276_210--Hb_054865_100 Hb_002477_280 Hb_002477_280 Hb_005276_210--Hb_002477_280 Hb_003952_070 Hb_003952_070 Hb_005276_210--Hb_003952_070 Hb_004600_040 Hb_004600_040 Hb_003097_150--Hb_004600_040 Hb_005237_010 Hb_005237_010 Hb_003097_150--Hb_005237_010 Hb_002609_110 Hb_002609_110 Hb_003097_150--Hb_002609_110 Hb_003097_150--Hb_002149_020 Hb_003097_150--Hb_001571_040 Hb_001790_020 Hb_001790_020 Hb_001571_040--Hb_001790_020 Hb_000032_570 Hb_000032_570 Hb_001571_040--Hb_000032_570 Hb_006332_020 Hb_006332_020 Hb_001571_040--Hb_006332_020 Hb_001571_040--Hb_066182_010 Hb_012634_010 Hb_012634_010 Hb_001571_040--Hb_012634_010 Hb_002043_190 Hb_002043_190 Hb_002081_130--Hb_002043_190 Hb_003025_020 Hb_003025_020 Hb_002081_130--Hb_003025_020 Hb_005993_040 Hb_005993_040 Hb_002081_130--Hb_005993_040 Hb_002391_300 Hb_002391_300 Hb_002081_130--Hb_002391_300 Hb_000093_160 Hb_000093_160 Hb_003010_030--Hb_000093_160 Hb_096563_010 Hb_096563_010 Hb_003010_030--Hb_096563_010 Hb_012008_020 Hb_012008_020 Hb_003010_030--Hb_012008_020 Hb_001258_090 Hb_001258_090 Hb_003010_030--Hb_001258_090 Hb_000120_790 Hb_000120_790 Hb_003010_030--Hb_000120_790 Hb_000089_220 Hb_000089_220 Hb_003010_030--Hb_000089_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2985 9.7239 6.00572 7.95937 21.5976 18.9027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7447 20.5102 13.2049 10.4234 6.0636

CAGE analysis