Hb_000300_070

Information

Type transcription factor
Description TF Family: MYB
Location Contig300: 43702-45149
Sequence    

Annotation

kegg
ID rcu:RCOM_0845210
description r2r3-myb transcription factor, putative
nr
ID XP_002530950.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID P81392
description Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1
trembl
ID B9SY81
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0845210 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 306

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_070 0.0 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_000252_240 0.081887045 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
3 Hb_000445_310 0.0986956903 - - hypothetical protein B456_011G218000 [Gossypium raimondii]
4 Hb_000163_140 0.1064464849 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
5 Hb_001544_060 0.1182104795 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
6 Hb_124677_010 0.1329207786 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002025_290 0.1368230993 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
8 Hb_000749_140 0.1392445333 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
9 Hb_003453_060 0.1423843021 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
10 Hb_000809_190 0.1425269056 - - PREDICTED: myosin-6-like [Jatropha curcas]
11 Hb_001916_110 0.1459834493 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
12 Hb_005575_010 0.149008922 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
13 Hb_001958_030 0.1499581008 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
14 Hb_000188_070 0.1569891441 - - calcineurin-like phosphoesterase [Manihot esculenta]
15 Hb_033834_020 0.1592534725 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001638_190 0.1594412821 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
17 Hb_023904_010 0.1601324541 - - -
18 Hb_007254_010 0.1602345141 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
19 Hb_000928_100 0.1635899222 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
20 Hb_173107_010 0.1637680208 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000300_070 Hb_000300_070 Hb_000252_240 Hb_000252_240 Hb_000300_070--Hb_000252_240 Hb_000445_310 Hb_000445_310 Hb_000300_070--Hb_000445_310 Hb_000163_140 Hb_000163_140 Hb_000300_070--Hb_000163_140 Hb_001544_060 Hb_001544_060 Hb_000300_070--Hb_001544_060 Hb_124677_010 Hb_124677_010 Hb_000300_070--Hb_124677_010 Hb_002025_290 Hb_002025_290 Hb_000300_070--Hb_002025_290 Hb_000252_240--Hb_001544_060 Hb_003453_060 Hb_003453_060 Hb_000252_240--Hb_003453_060 Hb_023904_010 Hb_023904_010 Hb_000252_240--Hb_023904_010 Hb_000252_240--Hb_000445_310 Hb_001638_190 Hb_001638_190 Hb_000252_240--Hb_001638_190 Hb_000445_310--Hb_000163_140 Hb_000445_310--Hb_001544_060 Hb_001958_030 Hb_001958_030 Hb_000445_310--Hb_001958_030 Hb_000188_070 Hb_000188_070 Hb_000445_310--Hb_000188_070 Hb_002918_170 Hb_002918_170 Hb_000163_140--Hb_002918_170 Hb_000163_140--Hb_001958_030 Hb_003387_010 Hb_003387_010 Hb_000163_140--Hb_003387_010 Hb_000163_140--Hb_000188_070 Hb_001544_060--Hb_003453_060 Hb_001898_100 Hb_001898_100 Hb_001544_060--Hb_001898_100 Hb_003337_020 Hb_003337_020 Hb_001544_060--Hb_003337_020 Hb_001544_060--Hb_001638_190 Hb_101133_030 Hb_101133_030 Hb_124677_010--Hb_101133_030 Hb_012807_030 Hb_012807_030 Hb_124677_010--Hb_012807_030 Hb_000866_060 Hb_000866_060 Hb_124677_010--Hb_000866_060 Hb_015044_010 Hb_015044_010 Hb_124677_010--Hb_015044_010 Hb_000749_140 Hb_000749_140 Hb_124677_010--Hb_000749_140 Hb_000128_040 Hb_000128_040 Hb_124677_010--Hb_000128_040 Hb_001285_020 Hb_001285_020 Hb_002025_290--Hb_001285_020 Hb_002025_290--Hb_003453_060 Hb_005575_010 Hb_005575_010 Hb_002025_290--Hb_005575_010 Hb_009102_010 Hb_009102_010 Hb_002025_290--Hb_009102_010 Hb_003050_010 Hb_003050_010 Hb_002025_290--Hb_003050_010 Hb_002025_290--Hb_001544_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.16268 13.6055 0.71249 0.019442 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.45468 8.26246

CAGE analysis