Hb_000300_080

Information

Type -
Description -
Location Contig300: 50590-59247
Sequence    

Annotation

kegg
ID tcc:TCM_025797
description Cysteine synthase 26 isoform 1
nr
ID XP_012070357.1
description PREDICTED: probable S-sulfocysteine synthase, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID O22682
description Probable S-sulfocysteine synthase, chloroplastic OS=Arabidopsis thaliana GN=At3g03630 PE=1 SV=1
trembl
ID A0A067L6B5
description Cysteine synthase OS=Jatropha curcas GN=JCGZ_02649 PE=3 SV=1
Gene Ontology
ID GO:0031977
description probable s-sulfocysteine chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31539: 50587-50992 , PASA_asmbl_31540: 53171-58659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_080 0.0 - - PREDICTED: probable S-sulfocysteine synthase, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_000723_040 0.1162789301 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_003942_020 0.1312719312 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
4 Hb_000075_040 0.1379038557 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
5 Hb_010812_040 0.1392364276 transcription factor TF Family: SNF2 PREDICTED: E3 ubiquitin-protein ligase SHPRH [Jatropha curcas]
6 Hb_009659_050 0.1396202888 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
7 Hb_004055_170 0.1427603486 - - nucleosome assembly protein, putative [Ricinus communis]
8 Hb_004450_040 0.1447678467 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
9 Hb_002461_060 0.1494488982 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
10 Hb_000030_180 0.1501752833 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
11 Hb_013607_030 0.1502548285 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
12 Hb_008642_040 0.1527115575 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
13 Hb_004330_090 0.1533789274 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
14 Hb_000173_250 0.1534108692 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
15 Hb_001369_610 0.1536342462 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
16 Hb_001541_050 0.1541748665 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
17 Hb_004994_120 0.1542984279 - - PREDICTED: acyl-coenzyme A thioesterase 13-like isoform X1 [Jatropha curcas]
18 Hb_003647_140 0.1543244176 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
19 Hb_002205_230 0.1555590599 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
20 Hb_002758_010 0.1557313174 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]

Gene co-expression network

sample Hb_000300_080 Hb_000300_080 Hb_000723_040 Hb_000723_040 Hb_000300_080--Hb_000723_040 Hb_003942_020 Hb_003942_020 Hb_000300_080--Hb_003942_020 Hb_000075_040 Hb_000075_040 Hb_000300_080--Hb_000075_040 Hb_010812_040 Hb_010812_040 Hb_000300_080--Hb_010812_040 Hb_009659_050 Hb_009659_050 Hb_000300_080--Hb_009659_050 Hb_004055_170 Hb_004055_170 Hb_000300_080--Hb_004055_170 Hb_022693_140 Hb_022693_140 Hb_000723_040--Hb_022693_140 Hb_004330_090 Hb_004330_090 Hb_000723_040--Hb_004330_090 Hb_013607_030 Hb_013607_030 Hb_000723_040--Hb_013607_030 Hb_012022_150 Hb_012022_150 Hb_000723_040--Hb_012022_150 Hb_000137_040 Hb_000137_040 Hb_000723_040--Hb_000137_040 Hb_002163_040 Hb_002163_040 Hb_000723_040--Hb_002163_040 Hb_007163_070 Hb_007163_070 Hb_003942_020--Hb_007163_070 Hb_008554_060 Hb_008554_060 Hb_003942_020--Hb_008554_060 Hb_011512_070 Hb_011512_070 Hb_003942_020--Hb_011512_070 Hb_189216_020 Hb_189216_020 Hb_003942_020--Hb_189216_020 Hb_000529_030 Hb_000529_030 Hb_003942_020--Hb_000529_030 Hb_146673_010 Hb_146673_010 Hb_003942_020--Hb_146673_010 Hb_004450_040 Hb_004450_040 Hb_000075_040--Hb_004450_040 Hb_001021_150 Hb_001021_150 Hb_000075_040--Hb_001021_150 Hb_001946_400 Hb_001946_400 Hb_000075_040--Hb_001946_400 Hb_001247_310 Hb_001247_310 Hb_000075_040--Hb_001247_310 Hb_003292_030 Hb_003292_030 Hb_000075_040--Hb_003292_030 Hb_002553_060 Hb_002553_060 Hb_000075_040--Hb_002553_060 Hb_001860_050 Hb_001860_050 Hb_010812_040--Hb_001860_050 Hb_003540_240 Hb_003540_240 Hb_010812_040--Hb_003540_240 Hb_000046_050 Hb_000046_050 Hb_010812_040--Hb_000046_050 Hb_001513_010 Hb_001513_010 Hb_010812_040--Hb_001513_010 Hb_000487_230 Hb_000487_230 Hb_010812_040--Hb_000487_230 Hb_002217_110 Hb_002217_110 Hb_009659_050--Hb_002217_110 Hb_001227_030 Hb_001227_030 Hb_009659_050--Hb_001227_030 Hb_004837_180 Hb_004837_180 Hb_009659_050--Hb_004837_180 Hb_000260_680 Hb_000260_680 Hb_009659_050--Hb_000260_680 Hb_000329_590 Hb_000329_590 Hb_009659_050--Hb_000329_590 Hb_004236_050 Hb_004236_050 Hb_009659_050--Hb_004236_050 Hb_003935_020 Hb_003935_020 Hb_004055_170--Hb_003935_020 Hb_004055_170--Hb_009659_050 Hb_021576_040 Hb_021576_040 Hb_004055_170--Hb_021576_040 Hb_002585_040 Hb_002585_040 Hb_004055_170--Hb_002585_040 Hb_002234_140 Hb_002234_140 Hb_004055_170--Hb_002234_140 Hb_000487_210 Hb_000487_210 Hb_004055_170--Hb_000487_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05868 1.35271 1.85112 0.898055 1.5466 1.56499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38338 3.76924 0.447637 1.42113 2.98995

CAGE analysis