Hb_000300_100

Information

Type -
Description -
Location Contig300: 66531-78721
Sequence    

Annotation

kegg
ID tcc:TCM_025799
description NADH:cytochrome B5 reductase 1 isoform 1
nr
ID XP_010091372.1
description NADH-cytochrome b5 reductase 1 [Morus notabilis]
swissprot
ID Q9ZNT1
description NADH--cytochrome b5 reductase 1 OS=Arabidopsis thaliana GN=CBR1 PE=1 SV=1
trembl
ID Q5PY86
description NADH:cytochrome b5 reductase OS=Vernicia fordii GN=CBR1A PE=2 SV=1
Gene Ontology
ID GO:0044464
description nadh--cytochrome b5 reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_100 0.0 - - NADH-cytochrome b5 reductase 1 [Morus notabilis]
2 Hb_010534_020 0.1250923568 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]
3 Hb_003398_040 0.1329450108 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
4 Hb_010381_040 0.1528467873 - - beta-galactosidase, putative [Ricinus communis]
5 Hb_000310_060 0.152905363 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
6 Hb_000310_120 0.1583299051 - - PREDICTED: probable transaldolase [Jatropha curcas]
7 Hb_001587_040 0.1590802999 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
8 Hb_001377_530 0.1593404425 - - NC domain-containing family protein [Populus trichocarpa]
9 Hb_004650_030 0.1641735383 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
10 Hb_000189_130 0.1651618392 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
11 Hb_000392_250 0.1675583152 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
12 Hb_000996_080 0.1703305645 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
13 Hb_000049_200 0.170460451 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
14 Hb_004195_140 0.1731975108 - - Sec14 cytosolic factor, putative [Ricinus communis]
15 Hb_000270_280 0.1748827626 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
16 Hb_000689_050 0.1751808749 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001408_170 0.176419903 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
18 Hb_004855_020 0.1782419159 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
19 Hb_010868_040 0.1791559355 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
20 Hb_005694_050 0.180130929 - - NC domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000300_100 Hb_000300_100 Hb_010534_020 Hb_010534_020 Hb_000300_100--Hb_010534_020 Hb_003398_040 Hb_003398_040 Hb_000300_100--Hb_003398_040 Hb_010381_040 Hb_010381_040 Hb_000300_100--Hb_010381_040 Hb_000310_060 Hb_000310_060 Hb_000300_100--Hb_000310_060 Hb_000310_120 Hb_000310_120 Hb_000300_100--Hb_000310_120 Hb_001587_040 Hb_001587_040 Hb_000300_100--Hb_001587_040 Hb_005271_140 Hb_005271_140 Hb_010534_020--Hb_005271_140 Hb_000392_250 Hb_000392_250 Hb_010534_020--Hb_000392_250 Hb_001232_090 Hb_001232_090 Hb_010534_020--Hb_001232_090 Hb_000757_130 Hb_000757_130 Hb_010534_020--Hb_000757_130 Hb_029253_010 Hb_029253_010 Hb_010534_020--Hb_029253_010 Hb_003398_040--Hb_000310_060 Hb_000009_420 Hb_000009_420 Hb_003398_040--Hb_000009_420 Hb_003398_040--Hb_001587_040 Hb_005527_060 Hb_005527_060 Hb_003398_040--Hb_005527_060 Hb_010868_040 Hb_010868_040 Hb_003398_040--Hb_010868_040 Hb_000753_110 Hb_000753_110 Hb_003398_040--Hb_000753_110 Hb_000207_350 Hb_000207_350 Hb_010381_040--Hb_000207_350 Hb_004855_020 Hb_004855_020 Hb_010381_040--Hb_004855_020 Hb_010381_040--Hb_010868_040 Hb_000243_060 Hb_000243_060 Hb_010381_040--Hb_000243_060 Hb_001123_310 Hb_001123_310 Hb_010381_040--Hb_001123_310 Hb_002701_070 Hb_002701_070 Hb_010381_040--Hb_002701_070 Hb_000270_280 Hb_000270_280 Hb_000310_060--Hb_000270_280 Hb_000310_060--Hb_001587_040 Hb_000940_030 Hb_000940_030 Hb_000310_060--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000310_060--Hb_000327_200 Hb_000310_060--Hb_005527_060 Hb_000406_030 Hb_000406_030 Hb_000310_120--Hb_000406_030 Hb_003680_220 Hb_003680_220 Hb_000310_120--Hb_003680_220 Hb_000589_170 Hb_000589_170 Hb_000310_120--Hb_000589_170 Hb_000500_220 Hb_000500_220 Hb_000310_120--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000310_120--Hb_008725_270 Hb_013405_070 Hb_013405_070 Hb_000310_120--Hb_013405_070 Hb_001587_040--Hb_005527_060 Hb_000996_080 Hb_000996_080 Hb_001587_040--Hb_000996_080 Hb_000307_070 Hb_000307_070 Hb_001587_040--Hb_000307_070 Hb_001390_100 Hb_001390_100 Hb_001587_040--Hb_001390_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.13164 0.55161 4.74602 2.79567 0.0688462 0.231976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42591 0.603832 0.158089 1.63304 2.37111

CAGE analysis