Hb_000300_130

Information

Type transcription factor
Description TF Family: MYB
Location Contig300: 111955-114814
Sequence    

Annotation

kegg
ID pop:POPTR_0013s06320g
description POPTRDRAFT_571286; hypothetical protein
nr
ID XP_011047039.1
description PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID B9I655
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s06320g PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-like protein q

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31554: 112390-114602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_130 0.0 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
2 Hb_031527_060 0.1889914919 - - glutamate decarboxylase, putative [Ricinus communis]
3 Hb_009545_020 0.198249223 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
4 Hb_000165_210 0.2024218394 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
5 Hb_001206_090 0.2157124751 - - pyruvate decarboxylase [Hevea brasiliensis]
6 Hb_183623_010 0.2164575506 - - aldo-keto reductase, putative [Ricinus communis]
7 Hb_001148_030 0.2184033101 - - -
8 Hb_003435_060 0.2184345916 - - carbonic anhydrase, putative [Ricinus communis]
9 Hb_009736_010 0.2214282096 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008014_030 0.2254752587 - - Aquaporin NIP1.1, putative [Ricinus communis]
11 Hb_001776_190 0.2276419238 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
12 Hb_070277_010 0.2290031195 - - PREDICTED: purine permease 3-like [Jatropha curcas]
13 Hb_000645_210 0.2298967773 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
14 Hb_158092_060 0.2307201899 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
15 Hb_000853_060 0.2330335396 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
16 Hb_007153_040 0.2389054643 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
17 Hb_006573_300 0.2402065945 - - ATP binding protein, putative [Ricinus communis]
18 Hb_029921_030 0.2405923864 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006420_090 0.2459935177 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
20 Hb_000297_020 0.2476556682 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_130 Hb_000300_130 Hb_031527_060 Hb_031527_060 Hb_000300_130--Hb_031527_060 Hb_009545_020 Hb_009545_020 Hb_000300_130--Hb_009545_020 Hb_000165_210 Hb_000165_210 Hb_000300_130--Hb_000165_210 Hb_001206_090 Hb_001206_090 Hb_000300_130--Hb_001206_090 Hb_183623_010 Hb_183623_010 Hb_000300_130--Hb_183623_010 Hb_001148_030 Hb_001148_030 Hb_000300_130--Hb_001148_030 Hb_031527_060--Hb_009545_020 Hb_000645_210 Hb_000645_210 Hb_031527_060--Hb_000645_210 Hb_009736_010 Hb_009736_010 Hb_031527_060--Hb_009736_010 Hb_000928_040 Hb_000928_040 Hb_031527_060--Hb_000928_040 Hb_003120_040 Hb_003120_040 Hb_031527_060--Hb_003120_040 Hb_009545_020--Hb_009736_010 Hb_009545_020--Hb_003120_040 Hb_124315_030 Hb_124315_030 Hb_009545_020--Hb_124315_030 Hb_000853_060 Hb_000853_060 Hb_009545_020--Hb_000853_060 Hb_004965_060 Hb_004965_060 Hb_009545_020--Hb_004965_060 Hb_000165_210--Hb_000853_060 Hb_000120_390 Hb_000120_390 Hb_000165_210--Hb_000120_390 Hb_000414_110 Hb_000414_110 Hb_000165_210--Hb_000414_110 Hb_000165_210--Hb_001206_090 Hb_002304_140 Hb_002304_140 Hb_000165_210--Hb_002304_140 Hb_000879_190 Hb_000879_190 Hb_000165_210--Hb_000879_190 Hb_001206_090--Hb_000645_210 Hb_127886_010 Hb_127886_010 Hb_001206_090--Hb_127886_010 Hb_000098_310 Hb_000098_310 Hb_001206_090--Hb_000098_310 Hb_001206_090--Hb_000928_040 Hb_004195_110 Hb_004195_110 Hb_001206_090--Hb_004195_110 Hb_001355_130 Hb_001355_130 Hb_183623_010--Hb_001355_130 Hb_000297_020 Hb_000297_020 Hb_183623_010--Hb_000297_020 Hb_001946_030 Hb_001946_030 Hb_183623_010--Hb_001946_030 Hb_138710_010 Hb_138710_010 Hb_183623_010--Hb_138710_010 Hb_094437_060 Hb_094437_060 Hb_183623_010--Hb_094437_060 Hb_010334_020 Hb_010334_020 Hb_001148_030--Hb_010334_020 Hb_001148_030--Hb_000645_210 Hb_001504_120 Hb_001504_120 Hb_001148_030--Hb_001504_120 Hb_001148_030--Hb_000165_210 Hb_000318_200 Hb_000318_200 Hb_001148_030--Hb_000318_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.7822 19.9688 2.07492 12.1165 0.039572 0.0781217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.43626 19.3713 10.3856 57.2839 1.24608

CAGE analysis