Hb_000300_170

Information

Type -
Description -
Location Contig300: 146502-147580
Sequence    

Annotation

kegg
ID pop:POPTR_0013s06280g
description hypothetical protein
nr
ID XP_012070364.1
description PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067DCK9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034425mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31556: 146427-147481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_170 0.0 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
2 Hb_000022_280 0.066536927 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
3 Hb_005489_120 0.0801350012 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
4 Hb_001053_110 0.0907153062 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
5 Hb_004129_110 0.1108179104 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
6 Hb_007313_010 0.1194326399 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
7 Hb_001856_160 0.1209161238 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000963_010 0.1223208996 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
9 Hb_010174_170 0.1243466499 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
10 Hb_001470_040 0.1282630249 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
11 Hb_002003_010 0.1283219554 - - hypothetical protein JCGZ_15062 [Jatropha curcas]
12 Hb_039496_010 0.1293960101 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
13 Hb_001369_620 0.1294744333 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
14 Hb_003266_060 0.1304121879 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
15 Hb_000979_080 0.1313268821 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
16 Hb_003847_050 0.1318536894 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
17 Hb_001963_020 0.135440699 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
18 Hb_023956_010 0.1385315159 - - glutathione s-transferase, putative [Ricinus communis]
19 Hb_003734_120 0.1392282364 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
20 Hb_003787_060 0.1403143994 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_000300_170 Hb_000300_170 Hb_000022_280 Hb_000022_280 Hb_000300_170--Hb_000022_280 Hb_005489_120 Hb_005489_120 Hb_000300_170--Hb_005489_120 Hb_001053_110 Hb_001053_110 Hb_000300_170--Hb_001053_110 Hb_004129_110 Hb_004129_110 Hb_000300_170--Hb_004129_110 Hb_007313_010 Hb_007313_010 Hb_000300_170--Hb_007313_010 Hb_001856_160 Hb_001856_160 Hb_000300_170--Hb_001856_160 Hb_000022_280--Hb_004129_110 Hb_010174_170 Hb_010174_170 Hb_000022_280--Hb_010174_170 Hb_166009_010 Hb_166009_010 Hb_000022_280--Hb_166009_010 Hb_000009_130 Hb_000009_130 Hb_000022_280--Hb_000009_130 Hb_000022_280--Hb_005489_120 Hb_005489_120--Hb_001053_110 Hb_000676_170 Hb_000676_170 Hb_005489_120--Hb_000676_170 Hb_005489_120--Hb_001856_160 Hb_012787_050 Hb_012787_050 Hb_005489_120--Hb_012787_050 Hb_129637_010 Hb_129637_010 Hb_001053_110--Hb_129637_010 Hb_000417_350 Hb_000417_350 Hb_001053_110--Hb_000417_350 Hb_005333_120 Hb_005333_120 Hb_001053_110--Hb_005333_120 Hb_001369_620 Hb_001369_620 Hb_001053_110--Hb_001369_620 Hb_004129_110--Hb_166009_010 Hb_004129_110--Hb_000009_130 Hb_004129_110--Hb_010174_170 Hb_003376_300 Hb_003376_300 Hb_004129_110--Hb_003376_300 Hb_000834_210 Hb_000834_210 Hb_007313_010--Hb_000834_210 Hb_000723_240 Hb_000723_240 Hb_007313_010--Hb_000723_240 Hb_003160_050 Hb_003160_050 Hb_007313_010--Hb_003160_050 Hb_003768_100 Hb_003768_100 Hb_007313_010--Hb_003768_100 Hb_001514_070 Hb_001514_070 Hb_007313_010--Hb_001514_070 Hb_003734_120 Hb_003734_120 Hb_007313_010--Hb_003734_120 Hb_001799_090 Hb_001799_090 Hb_001856_160--Hb_001799_090 Hb_006153_130 Hb_006153_130 Hb_001856_160--Hb_006153_130 Hb_001856_160--Hb_003376_300 Hb_002289_110 Hb_002289_110 Hb_001856_160--Hb_002289_110 Hb_000454_200 Hb_000454_200 Hb_001856_160--Hb_000454_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104091 15.0532 13.5851 28.4525 0.165125 0.135774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 43.2652 4.73723

CAGE analysis