Hb_000300_190

Information

Type -
Description -
Location Contig300: 178194-181211
Sequence    

Annotation

kegg
ID pop:POPTR_0013s06270g
description C2 domain-containing family protein
nr
ID XP_012070365.1
description PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID A0A067KXD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02658 PE=4 SV=1
Gene Ontology
ID GO:0016757
description c2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31560: 178115-178274 , PASA_asmbl_31562: 178570-181345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_190 0.0 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
2 Hb_003992_280 0.0626902012 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
3 Hb_003055_080 0.0966746345 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
4 Hb_002965_060 0.0975365118 - - Protein COBRA precursor, putative [Ricinus communis]
5 Hb_006120_130 0.1145437678 - - -
6 Hb_002639_050 0.1157230594 - - multicopper oxidase, putative [Ricinus communis]
7 Hb_000375_260 0.1177645141 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
8 Hb_001195_550 0.1190148442 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
9 Hb_002028_270 0.1207683708 - - Pectinesterase-1 precursor, putative [Ricinus communis]
10 Hb_001159_090 0.1218727219 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
11 Hb_001828_110 0.1256141342 - - PREDICTED: lysine histidine transporter 1-like [Tarenaya hassleriana]
12 Hb_003728_110 0.127953588 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
13 Hb_024714_090 0.1302257893 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
14 Hb_003935_040 0.13305979 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
15 Hb_000359_100 0.1337793793 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000022_080 0.1352245484 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
17 Hb_008686_010 0.1356181055 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000862_050 0.1371712491 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
19 Hb_169893_010 0.1388015631 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
20 Hb_000742_290 0.13907008 - - Reticuline oxidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000300_190 Hb_000300_190 Hb_003992_280 Hb_003992_280 Hb_000300_190--Hb_003992_280 Hb_003055_080 Hb_003055_080 Hb_000300_190--Hb_003055_080 Hb_002965_060 Hb_002965_060 Hb_000300_190--Hb_002965_060 Hb_006120_130 Hb_006120_130 Hb_000300_190--Hb_006120_130 Hb_002639_050 Hb_002639_050 Hb_000300_190--Hb_002639_050 Hb_000375_260 Hb_000375_260 Hb_000300_190--Hb_000375_260 Hb_003728_110 Hb_003728_110 Hb_003992_280--Hb_003728_110 Hb_003992_280--Hb_003055_080 Hb_003992_280--Hb_002965_060 Hb_001195_550 Hb_001195_550 Hb_003992_280--Hb_001195_550 Hb_000020_050 Hb_000020_050 Hb_003992_280--Hb_000020_050 Hb_003055_080--Hb_002965_060 Hb_000878_120 Hb_000878_120 Hb_003055_080--Hb_000878_120 Hb_003055_080--Hb_001195_550 Hb_006351_030 Hb_006351_030 Hb_003055_080--Hb_006351_030 Hb_003055_080--Hb_000375_260 Hb_002965_060--Hb_006120_130 Hb_002965_060--Hb_000375_260 Hb_002965_060--Hb_003728_110 Hb_000289_020 Hb_000289_020 Hb_006120_130--Hb_000289_020 Hb_006120_130--Hb_000375_260 Hb_000862_050 Hb_000862_050 Hb_006120_130--Hb_000862_050 Hb_008725_100 Hb_008725_100 Hb_006120_130--Hb_008725_100 Hb_043552_010 Hb_043552_010 Hb_006120_130--Hb_043552_010 Hb_002028_270 Hb_002028_270 Hb_006120_130--Hb_002028_270 Hb_002639_050--Hb_001195_550 Hb_001054_040 Hb_001054_040 Hb_002639_050--Hb_001054_040 Hb_002301_400 Hb_002301_400 Hb_002639_050--Hb_002301_400 Hb_001159_090 Hb_001159_090 Hb_002639_050--Hb_001159_090 Hb_006196_030 Hb_006196_030 Hb_002639_050--Hb_006196_030 Hb_000375_260--Hb_001159_090 Hb_001709_090 Hb_001709_090 Hb_000375_260--Hb_001709_090 Hb_000375_260--Hb_043552_010 Hb_000375_260--Hb_002028_270 Hb_003992_020 Hb_003992_020 Hb_000375_260--Hb_003992_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134762 2.14846 9.7405 10.7667 0.118069 0.0798166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.173088 0.113506 0.173718 0.913868 1.5743

CAGE analysis