Hb_000300_260

Information

Type -
Description -
Location Contig300: 228054-232242
Sequence    

Annotation

kegg
ID tcc:TCM_025837
description ATPase family associated with various cellular activities (AAA) isoform 1
nr
ID XP_012070377.1
description PREDICTED: replication factor C subunit 3 [Jatropha curcas]
swissprot
ID Q8VXX4
description Replication factor C subunit 3 OS=Arabidopsis thaliana GN=RFC3 PE=2 SV=1
trembl
ID A0A067KTU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02666 PE=4 SV=1
Gene Ontology
ID GO:0003677
description replication factor c subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31573: 224140-227504 , PASA_asmbl_31574: 228091-232295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_260 0.0 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
2 Hb_004312_010 0.0574924989 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
3 Hb_000173_310 0.0640018551 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
4 Hb_012565_070 0.0670885908 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
5 Hb_003213_010 0.0697288503 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
6 Hb_001723_150 0.0719495031 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
7 Hb_000086_170 0.0754888208 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
8 Hb_001517_050 0.0776956987 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
9 Hb_006132_110 0.0784589118 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003207_180 0.0794145001 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
11 Hb_032202_100 0.0798856429 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
12 Hb_001025_090 0.0802427676 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
13 Hb_003848_040 0.0802752078 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
14 Hb_000270_310 0.0817615147 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
15 Hb_002572_020 0.0832844282 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
16 Hb_002946_190 0.083395372 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
17 Hb_000130_270 0.084268184 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
18 Hb_001863_380 0.0844193323 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
19 Hb_004807_020 0.0844587003 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
20 Hb_171900_090 0.0848783987 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000300_260 Hb_000300_260 Hb_004312_010 Hb_004312_010 Hb_000300_260--Hb_004312_010 Hb_000173_310 Hb_000173_310 Hb_000300_260--Hb_000173_310 Hb_012565_070 Hb_012565_070 Hb_000300_260--Hb_012565_070 Hb_003213_010 Hb_003213_010 Hb_000300_260--Hb_003213_010 Hb_001723_150 Hb_001723_150 Hb_000300_260--Hb_001723_150 Hb_000086_170 Hb_000086_170 Hb_000300_260--Hb_000086_170 Hb_006132_110 Hb_006132_110 Hb_004312_010--Hb_006132_110 Hb_004312_010--Hb_000086_170 Hb_004312_010--Hb_000173_310 Hb_006615_050 Hb_006615_050 Hb_004312_010--Hb_006615_050 Hb_004312_010--Hb_003213_010 Hb_000173_310--Hb_003213_010 Hb_000173_310--Hb_001723_150 Hb_002572_020 Hb_002572_020 Hb_000173_310--Hb_002572_020 Hb_002413_010 Hb_002413_010 Hb_000173_310--Hb_002413_010 Hb_003848_040 Hb_003848_040 Hb_012565_070--Hb_003848_040 Hb_000457_180 Hb_000457_180 Hb_012565_070--Hb_000457_180 Hb_001863_380 Hb_001863_380 Hb_012565_070--Hb_001863_380 Hb_002307_180 Hb_002307_180 Hb_012565_070--Hb_002307_180 Hb_001105_170 Hb_001105_170 Hb_012565_070--Hb_001105_170 Hb_003213_010--Hb_001723_150 Hb_000649_230 Hb_000649_230 Hb_003213_010--Hb_000649_230 Hb_002272_050 Hb_002272_050 Hb_003213_010--Hb_002272_050 Hb_001723_150--Hb_002272_050 Hb_003861_060 Hb_003861_060 Hb_001723_150--Hb_003861_060 Hb_018790_020 Hb_018790_020 Hb_001723_150--Hb_018790_020 Hb_000270_310 Hb_000270_310 Hb_000086_170--Hb_000270_310 Hb_161574_020 Hb_161574_020 Hb_000086_170--Hb_161574_020 Hb_014720_120 Hb_014720_120 Hb_000086_170--Hb_014720_120 Hb_000336_210 Hb_000336_210 Hb_000086_170--Hb_000336_210 Hb_000086_170--Hb_002272_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.222 19.4447 44.9304 30.7566 16.0901 16.4655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6657 32.2785 17.0285 15.7196 16.5105

CAGE analysis