Hb_000300_270

Information

Type -
Description -
Location Contig300: 234222-244340
Sequence    

Annotation

kegg
ID rcu:RCOM_1321230
description cationic amino acid transporter, putative
nr
ID XP_002525690.1
description cationic amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9ASS7
description Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=2 SV=1
trembl
ID B9SI71
description Cationic amino acid transporter, putative OS=Ricinus communis GN=RCOM_1321230 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cationic amino acid transporter vacuolar-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31575: 234242-241933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_270 0.0 - - cationic amino acid transporter, putative [Ricinus communis]
2 Hb_000049_020 0.0506830757 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
3 Hb_002046_160 0.0546163061 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000256_150 0.0558917111 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
5 Hb_002883_030 0.0559592359 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
6 Hb_004452_110 0.058030795 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
7 Hb_000345_160 0.0642968555 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
8 Hb_011249_070 0.0673858544 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
9 Hb_001712_060 0.0686504649 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
10 Hb_003498_080 0.0737007857 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
11 Hb_001662_100 0.0743106054 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
12 Hb_000258_070 0.0746887503 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
13 Hb_004102_170 0.0764366856 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
14 Hb_004705_170 0.0781963694 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
15 Hb_004607_090 0.0793056874 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
16 Hb_000787_160 0.0797359939 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
17 Hb_003581_200 0.0801801707 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
18 Hb_006658_020 0.0802109503 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
19 Hb_001876_040 0.0805480879 - - PREDICTED: mucin-5B [Jatropha curcas]
20 Hb_000313_220 0.0811899922 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_270 Hb_000300_270 Hb_000049_020 Hb_000049_020 Hb_000300_270--Hb_000049_020 Hb_002046_160 Hb_002046_160 Hb_000300_270--Hb_002046_160 Hb_000256_150 Hb_000256_150 Hb_000300_270--Hb_000256_150 Hb_002883_030 Hb_002883_030 Hb_000300_270--Hb_002883_030 Hb_004452_110 Hb_004452_110 Hb_000300_270--Hb_004452_110 Hb_000345_160 Hb_000345_160 Hb_000300_270--Hb_000345_160 Hb_000049_020--Hb_000345_160 Hb_000049_020--Hb_000256_150 Hb_004102_170 Hb_004102_170 Hb_000049_020--Hb_004102_170 Hb_000049_020--Hb_002883_030 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300 Hb_002046_160--Hb_004452_110 Hb_001712_060 Hb_001712_060 Hb_002046_160--Hb_001712_060 Hb_000768_200 Hb_000768_200 Hb_002046_160--Hb_000768_200 Hb_003581_200 Hb_003581_200 Hb_002046_160--Hb_003581_200 Hb_006658_020 Hb_006658_020 Hb_002046_160--Hb_006658_020 Hb_007481_010 Hb_007481_010 Hb_000256_150--Hb_007481_010 Hb_001269_330 Hb_001269_330 Hb_000256_150--Hb_001269_330 Hb_009569_040 Hb_009569_040 Hb_000256_150--Hb_009569_040 Hb_000256_150--Hb_004452_110 Hb_002883_030--Hb_000345_160 Hb_002897_090 Hb_002897_090 Hb_002883_030--Hb_002897_090 Hb_001662_100 Hb_001662_100 Hb_002883_030--Hb_001662_100 Hb_004037_020 Hb_004037_020 Hb_002883_030--Hb_004037_020 Hb_004452_110--Hb_000345_160 Hb_000976_140 Hb_000976_140 Hb_004452_110--Hb_000976_140 Hb_005730_040 Hb_005730_040 Hb_004452_110--Hb_005730_040 Hb_000313_220 Hb_000313_220 Hb_004452_110--Hb_000313_220 Hb_000345_160--Hb_004037_020 Hb_004705_170 Hb_004705_170 Hb_000345_160--Hb_004705_170 Hb_001481_060 Hb_001481_060 Hb_000345_160--Hb_001481_060 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7949 18.7228 18.0762 33.1005 12.9182 18.4316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9273 16.5571 13.281 15.0853 26.5953

CAGE analysis