Hb_000300_280

Information

Type -
Description -
Location Contig300: 245434-255271
Sequence    

Annotation

kegg
ID tcc:TCM_025844
description BTB-POZ and MATH domain 4 isoform 1
nr
ID XP_012070390.1
description PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
swissprot
ID Q9SRV1
description BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana GN=BPM4 PE=1 SV=1
trembl
ID A0A067KU29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02672 PE=4 SV=1
Gene Ontology
ID GO:0005829
description btb poz and math domain-containing protein 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31577: 245499-255006
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_280 0.0 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
2 Hb_004310_060 0.0550743844 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_000879_140 0.0567155461 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
4 Hb_000370_030 0.062468275 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
5 Hb_003728_030 0.0688595566 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
6 Hb_000184_130 0.0738590774 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
7 Hb_000373_270 0.0766191829 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
8 Hb_000645_150 0.0768949408 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000483_360 0.0784299101 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
10 Hb_000803_300 0.081099989 - - nuclear movement protein nudc, putative [Ricinus communis]
11 Hb_000236_370 0.0812338703 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
12 Hb_002111_030 0.0835860395 - - PREDICTED: NEDD8 ultimate buster 1 isoform X1 [Jatropha curcas]
13 Hb_003602_040 0.0838862605 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
14 Hb_026099_010 0.0839201534 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
15 Hb_007590_080 0.0839570835 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
16 Hb_007894_140 0.0843427984 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
17 Hb_000186_280 0.084503697 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
18 Hb_002097_090 0.0845329939 - - Splicing factor 3A subunit, putative [Ricinus communis]
19 Hb_004934_090 0.0849396477 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
20 Hb_028639_060 0.0851312655 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000300_280 Hb_000300_280 Hb_004310_060 Hb_004310_060 Hb_000300_280--Hb_004310_060 Hb_000879_140 Hb_000879_140 Hb_000300_280--Hb_000879_140 Hb_000370_030 Hb_000370_030 Hb_000300_280--Hb_000370_030 Hb_003728_030 Hb_003728_030 Hb_000300_280--Hb_003728_030 Hb_000184_130 Hb_000184_130 Hb_000300_280--Hb_000184_130 Hb_000373_270 Hb_000373_270 Hb_000300_280--Hb_000373_270 Hb_005147_110 Hb_005147_110 Hb_004310_060--Hb_005147_110 Hb_008725_250 Hb_008725_250 Hb_004310_060--Hb_008725_250 Hb_004310_060--Hb_000879_140 Hb_005914_230 Hb_005914_230 Hb_004310_060--Hb_005914_230 Hb_018663_020 Hb_018663_020 Hb_004310_060--Hb_018663_020 Hb_000803_300 Hb_000803_300 Hb_000879_140--Hb_000803_300 Hb_000645_150 Hb_000645_150 Hb_000879_140--Hb_000645_150 Hb_000236_320 Hb_000236_320 Hb_000879_140--Hb_000236_320 Hb_007590_080 Hb_007590_080 Hb_000879_140--Hb_007590_080 Hb_000370_030--Hb_000184_130 Hb_000457_060 Hb_000457_060 Hb_000370_030--Hb_000457_060 Hb_000370_030--Hb_004310_060 Hb_000568_040 Hb_000568_040 Hb_000370_030--Hb_000568_040 Hb_000316_030 Hb_000316_030 Hb_000370_030--Hb_000316_030 Hb_002030_030 Hb_002030_030 Hb_003728_030--Hb_002030_030 Hb_000483_360 Hb_000483_360 Hb_003728_030--Hb_000483_360 Hb_000556_020 Hb_000556_020 Hb_003728_030--Hb_000556_020 Hb_003994_240 Hb_003994_240 Hb_003728_030--Hb_003994_240 Hb_001811_150 Hb_001811_150 Hb_003728_030--Hb_001811_150 Hb_000915_050 Hb_000915_050 Hb_000184_130--Hb_000915_050 Hb_004204_020 Hb_004204_020 Hb_000184_130--Hb_004204_020 Hb_003362_040 Hb_003362_040 Hb_000184_130--Hb_003362_040 Hb_002039_010 Hb_002039_010 Hb_000184_130--Hb_002039_010 Hb_004734_060 Hb_004734_060 Hb_000184_130--Hb_004734_060 Hb_001341_030 Hb_001341_030 Hb_000373_270--Hb_001341_030 Hb_000373_270--Hb_005147_110 Hb_000373_270--Hb_004310_060 Hb_000186_280 Hb_000186_280 Hb_000373_270--Hb_000186_280 Hb_000373_270--Hb_000879_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
119.453 51.8978 15.4242 28.6544 90.6188 115.126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.7783 52.3468 55.6803 51.9507 18.3774

CAGE analysis