Hb_000300_360

Information

Type -
Description -
Location Contig300: 293408-303995
Sequence    

Annotation

kegg
ID pop:POPTR_0013s05950g
description POPTRDRAFT_1096842; 3'-5' exonuclease domain-containing family protein
nr
ID XP_012070404.1
description PREDICTED: exosome component 10 [Jatropha curcas]
swissprot
ID Q01780
description Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2
trembl
ID A0A067KXG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02683 PE=4 SV=1
Gene Ontology
ID GO:0000176
description exosome component 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31580: 293552-295892 , PASA_asmbl_31582: 295926-303721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_360 0.0 - - PREDICTED: exosome component 10 [Jatropha curcas]
2 Hb_007982_070 0.0615266096 - - PREDICTED: protein CPR-5 [Jatropha curcas]
3 Hb_001633_040 0.0622561901 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
4 Hb_000796_190 0.0629577133 - - hypothetical protein F383_31148 [Gossypium arboreum]
5 Hb_140049_020 0.0633818151 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
6 Hb_080147_040 0.0645797902 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
7 Hb_007558_120 0.0672135952 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
8 Hb_032202_110 0.0685087098 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
9 Hb_140049_030 0.0687810368 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
10 Hb_031042_070 0.0709568965 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002045_150 0.0711469805 - - histone acetyltransferase gcn5, putative [Ricinus communis]
12 Hb_001454_320 0.0714208899 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
13 Hb_000329_130 0.0720923173 - - beta-tubulin cofactor d, putative [Ricinus communis]
14 Hb_033883_060 0.072374933 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
15 Hb_000136_090 0.0731921906 - - programmed cell death protein, putative [Ricinus communis]
16 Hb_000270_460 0.0744489797 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
17 Hb_000098_130 0.0746512113 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
18 Hb_001799_050 0.0758263759 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
19 Hb_011386_040 0.0760949243 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
20 Hb_004635_050 0.0787531596 - - nucleolar phosphoprotein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000300_360 Hb_000300_360 Hb_007982_070 Hb_007982_070 Hb_000300_360--Hb_007982_070 Hb_001633_040 Hb_001633_040 Hb_000300_360--Hb_001633_040 Hb_000796_190 Hb_000796_190 Hb_000300_360--Hb_000796_190 Hb_140049_020 Hb_140049_020 Hb_000300_360--Hb_140049_020 Hb_080147_040 Hb_080147_040 Hb_000300_360--Hb_080147_040 Hb_007558_120 Hb_007558_120 Hb_000300_360--Hb_007558_120 Hb_031042_070 Hb_031042_070 Hb_007982_070--Hb_031042_070 Hb_000406_240 Hb_000406_240 Hb_007982_070--Hb_000406_240 Hb_000270_460 Hb_000270_460 Hb_007982_070--Hb_000270_460 Hb_007982_070--Hb_007558_120 Hb_032202_110 Hb_032202_110 Hb_007982_070--Hb_032202_110 Hb_001633_040--Hb_031042_070 Hb_033883_060 Hb_033883_060 Hb_001633_040--Hb_033883_060 Hb_001633_040--Hb_007982_070 Hb_002163_010 Hb_002163_010 Hb_001633_040--Hb_002163_010 Hb_030565_090 Hb_030565_090 Hb_001633_040--Hb_030565_090 Hb_000796_190--Hb_007558_120 Hb_003124_130 Hb_003124_130 Hb_000796_190--Hb_003124_130 Hb_000329_130 Hb_000329_130 Hb_000796_190--Hb_000329_130 Hb_002174_020 Hb_002174_020 Hb_000796_190--Hb_002174_020 Hb_001454_320 Hb_001454_320 Hb_000796_190--Hb_001454_320 Hb_000313_340 Hb_000313_340 Hb_140049_020--Hb_000313_340 Hb_019153_020 Hb_019153_020 Hb_140049_020--Hb_019153_020 Hb_005539_190 Hb_005539_190 Hb_140049_020--Hb_005539_190 Hb_140049_020--Hb_000329_130 Hb_007229_040 Hb_007229_040 Hb_140049_020--Hb_007229_040 Hb_000363_130 Hb_000363_130 Hb_140049_020--Hb_000363_130 Hb_009620_030 Hb_009620_030 Hb_080147_040--Hb_009620_030 Hb_001953_150 Hb_001953_150 Hb_080147_040--Hb_001953_150 Hb_006452_160 Hb_006452_160 Hb_080147_040--Hb_006452_160 Hb_005188_060 Hb_005188_060 Hb_080147_040--Hb_005188_060 Hb_080147_040--Hb_140049_020 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_007558_120--Hb_000329_130 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.0246 32.379 20.3165 10.832 32.4804 36.5242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0648 12.2305 10.7946 21.0901 11.4286

CAGE analysis