Hb_000300_380

Information

Type -
Description -
Location Contig300: 343340-348314
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_380 0.0 - - -
2 Hb_015456_020 0.1004498132 - - -
3 Hb_000922_150 0.1302919589 - - -
4 Hb_017438_020 0.1331632518 - - -
5 Hb_004204_190 0.1371843853 - - putative iron-sulfur cluster biosynthesis protein Isd11 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
6 Hb_000958_010 0.1444564757 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005333_040 0.1562448998 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
8 Hb_001158_030 0.159114493 - - -
9 Hb_000183_070 0.1595793525 - - -
10 Hb_004374_050 0.1595874921 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005015_010 0.1619979788 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
12 Hb_002111_050 0.1623531724 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
13 Hb_028872_050 0.1626472713 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
14 Hb_001341_040 0.1634479206 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
15 Hb_027556_010 0.1647070655 - - -
16 Hb_008453_020 0.1676965676 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
17 Hb_004032_240 0.1680542637 - - electron transporter, putative [Ricinus communis]
18 Hb_006816_290 0.1705079421 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
19 Hb_001437_300 0.1706470456 - - -
20 Hb_128548_020 0.1706912451 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]

Gene co-expression network

sample Hb_000300_380 Hb_000300_380 Hb_015456_020 Hb_015456_020 Hb_000300_380--Hb_015456_020 Hb_000922_150 Hb_000922_150 Hb_000300_380--Hb_000922_150 Hb_017438_020 Hb_017438_020 Hb_000300_380--Hb_017438_020 Hb_004204_190 Hb_004204_190 Hb_000300_380--Hb_004204_190 Hb_000958_010 Hb_000958_010 Hb_000300_380--Hb_000958_010 Hb_005333_040 Hb_005333_040 Hb_000300_380--Hb_005333_040 Hb_015456_020--Hb_005333_040 Hb_001158_030 Hb_001158_030 Hb_015456_020--Hb_001158_030 Hb_015456_020--Hb_004204_190 Hb_000183_070 Hb_000183_070 Hb_015456_020--Hb_000183_070 Hb_000014_100 Hb_000014_100 Hb_015456_020--Hb_000014_100 Hb_000922_150--Hb_017438_020 Hb_000258_130 Hb_000258_130 Hb_000922_150--Hb_000258_130 Hb_004374_050 Hb_004374_050 Hb_000922_150--Hb_004374_050 Hb_000922_150--Hb_000183_070 Hb_005015_010 Hb_005015_010 Hb_000922_150--Hb_005015_010 Hb_017438_020--Hb_000258_130 Hb_002942_220 Hb_002942_220 Hb_017438_020--Hb_002942_220 Hb_004241_070 Hb_004241_070 Hb_017438_020--Hb_004241_070 Hb_017168_010 Hb_017168_010 Hb_017438_020--Hb_017168_010 Hb_004204_190--Hb_005333_040 Hb_006452_060 Hb_006452_060 Hb_004204_190--Hb_006452_060 Hb_001220_040 Hb_001220_040 Hb_004204_190--Hb_001220_040 Hb_001214_030 Hb_001214_030 Hb_004204_190--Hb_001214_030 Hb_008453_020 Hb_008453_020 Hb_000958_010--Hb_008453_020 Hb_001514_200 Hb_001514_200 Hb_000958_010--Hb_001514_200 Hb_004032_240 Hb_004032_240 Hb_000958_010--Hb_004032_240 Hb_000117_040 Hb_000117_040 Hb_000958_010--Hb_000117_040 Hb_011609_190 Hb_011609_190 Hb_000958_010--Hb_011609_190 Hb_002200_110 Hb_002200_110 Hb_000958_010--Hb_002200_110 Hb_033080_010 Hb_033080_010 Hb_005333_040--Hb_033080_010 Hb_006501_150 Hb_006501_150 Hb_005333_040--Hb_006501_150 Hb_000270_840 Hb_000270_840 Hb_005333_040--Hb_000270_840 Hb_000538_020 Hb_000538_020 Hb_005333_040--Hb_000538_020 Hb_000329_690 Hb_000329_690 Hb_005333_040--Hb_000329_690 Hb_004970_200 Hb_004970_200 Hb_005333_040--Hb_004970_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.75585 0.901504 0.142813 0.0570375 6.59797 1.92886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91802 2.67047 1.68547 0.503859 0.851309

CAGE analysis