Hb_000300_390

Information

Type -
Description -
Location Contig300: 350197-356073
Sequence    

Annotation

kegg
ID rcu:RCOM_1321780
description BTB/POZ domain-containing protein KCTD9, putative
nr
ID XP_002525705.1
description BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
swissprot
ID Q9SE95
description FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2 PE=1 SV=1
trembl
ID B9SI86
description BTB/POZ domain-containing protein KCTD9, putative OS=Ricinus communis GN=RCOM_1321780 PE=4 SV=1
Gene Ontology
ID GO:0051260
description fh protein interacting protein fip2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31583: 350196-355145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_390 0.0 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
2 Hb_002316_120 0.0494481961 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
3 Hb_000789_110 0.0628359205 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
4 Hb_005663_120 0.0687567283 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
5 Hb_012539_020 0.0730206125 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
6 Hb_120823_010 0.0760012955 - - -
7 Hb_032969_030 0.0782194963 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_000236_150 0.0807187015 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
9 Hb_001780_050 0.0812055103 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
10 Hb_006588_080 0.0852586285 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
11 Hb_005914_200 0.0888937272 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
12 Hb_001377_380 0.0892937285 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
13 Hb_000163_130 0.0901062424 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
14 Hb_000635_080 0.0901578341 - - 60S ribosomal protein L17A [Hevea brasiliensis]
15 Hb_004007_180 0.0906882361 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
16 Hb_000367_210 0.0924311639 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
17 Hb_000389_080 0.0935282576 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
18 Hb_000976_250 0.0949757113 - - -
19 Hb_000896_120 0.095216286 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
20 Hb_004735_050 0.0963257554 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_390 Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_000300_390--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000300_390--Hb_000789_110 Hb_005663_120 Hb_005663_120 Hb_000300_390--Hb_005663_120 Hb_012539_020 Hb_012539_020 Hb_000300_390--Hb_012539_020 Hb_120823_010 Hb_120823_010 Hb_000300_390--Hb_120823_010 Hb_032969_030 Hb_032969_030 Hb_000300_390--Hb_032969_030 Hb_002316_120--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_002316_120--Hb_000270_720 Hb_001377_380 Hb_001377_380 Hb_002316_120--Hb_001377_380 Hb_002316_120--Hb_012539_020 Hb_004007_180 Hb_004007_180 Hb_002316_120--Hb_004007_180 Hb_000789_110--Hb_000270_720 Hb_000820_130 Hb_000820_130 Hb_000789_110--Hb_000820_130 Hb_000789_110--Hb_001377_380 Hb_000789_110--Hb_004007_180 Hb_005663_120--Hb_012539_020 Hb_005663_120--Hb_002316_120 Hb_005663_120--Hb_032969_030 Hb_005527_040 Hb_005527_040 Hb_005663_120--Hb_005527_040 Hb_000389_080 Hb_000389_080 Hb_005663_120--Hb_000389_080 Hb_012539_020--Hb_000389_080 Hb_005914_200 Hb_005914_200 Hb_012539_020--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_012539_020--Hb_001780_050 Hb_006588_080 Hb_006588_080 Hb_120823_010--Hb_006588_080 Hb_120823_010--Hb_000389_080 Hb_120823_010--Hb_002316_120 Hb_120823_010--Hb_012539_020 Hb_000062_390 Hb_000062_390 Hb_120823_010--Hb_000062_390 Hb_003581_220 Hb_003581_220 Hb_032969_030--Hb_003581_220 Hb_000976_250 Hb_000976_250 Hb_032969_030--Hb_000976_250 Hb_001785_040 Hb_001785_040 Hb_032969_030--Hb_001785_040 Hb_001157_010 Hb_001157_010 Hb_032969_030--Hb_001157_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4479 5.65308 6.74125 22.8109 8.23888 16.1938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.9493 107.411 48.2962 15.1734 8.40409

CAGE analysis