Hb_000300_400

Information

Type -
Description -
Location Contig300: 357541-358166
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G114100g
description hypothetical protein
nr
ID XP_007161982.1
description hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID K7MMH1
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31585: 357565-358309
cDNA
(Sanger)
(ID:Location)		 002_G01.ab1: 357562-357672 , 002_I18.ab1: 357563-357853 , 003_A10.ab1: 357565-358142 , 003_J22.ab1: 358069-358309 , 003_L18.ab1: 357564-358245 , 005_M04.ab1: 357565-357828 , 007_H22.ab1: 357565-357853 , 007_M01.ab1: 357728-358265 , 008_A24.ab1: 357565-357853 , 008_K09.ab1: 357565-357828 , 008_N06.ab1: 357732-357828 , 010_K08.ab1: 357565-358185 , 011_B06.ab1: 357565-357828 , 011_H12.ab1: 357564-357854 , 011_M15.ab1: 357565-358309 , 012_G15.ab1: 357565-357853 , 016_C16.ab1: 357565-357828 , 016_H05.ab1: 357565-358250 , 016_N20.ab1: 357565-357828 , 017_I05.ab1: 357564-357854 , 018_D21.ab1: 357565-358133 , 018_G06.ab1: 357565-358134 , 019_I16.ab1: 357565-358134 , 020_B24.ab1: 357565-358270 , 021_L16.ab1: 357565-358309 , 022_B07.ab1: 357565-358111 , 022_K18.ab1: 357564-357854 , 023_O16.ab1: 357566-357828 , 025_D03.ab1: 357563-357853 , 025_N22.ab1: 357563-357931 , 027_L18.ab1: 357565-357853 , 028_B13.ab1: 357565-358131 , 029_L21.ab1: 357575-358058 , 030_I06.ab1: 357565-358131 , 031_H12.ab1: 357565-358133 , 032_A13.ab1: 357565-358184 , 032_L06.ab1: 357565-357853 , 034_I20.ab1: 357565-358264 , 035_G23.ab1: 357562-357828 , 035_M15.ab1: 357565-358254 , 036_B01.ab1: 357565-357853 , 036_D24.ab1: 357565-358131 , 037_D10.ab1: 357565-358138 , 037_G20.ab1: 357562-358133 , 038_B01.ab1: 357562-358277 , 038_B14.ab1: 357565-358303 , 040_L03.ab1: 357565-358309 , 041_P03.ab1: 357565-357828 , 042_F05.ab1: 357565-357852 , 043_A15.ab1: 357565-358131 , 043_L15.ab1: 357565-357701 , 045_P15.ab1: 357565-357853 , 046_O18.ab1: 357565-357853 , 047_D22.ab1: 357565-358182 , 048_D13.ab1: 357565-357853 , 048_E08.ab1: 357564-358203 , 049_A08.ab1: 357740-358135 , 049_F15.ab1: 357574-358066 , 050_F05.ab1: 357565-358131 , 052_A07.ab1: 357566-358133 , 053_J03.ab1: 357565-358133

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_400 0.0 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
2 Hb_000603_210 0.0837874865 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
3 Hb_005539_210 0.1136146124 - - -
4 Hb_149683_010 0.1150759468 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
5 Hb_006816_440 0.1161937568 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_002235_230 0.122996019 - - latex abundant protein 1 [Hevea brasiliensis]
7 Hb_001723_080 0.1292935695 - - hypothetical protein L484_026139 [Morus notabilis]
8 Hb_003777_230 0.1348052561 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
9 Hb_012395_210 0.1375866538 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004206_030 0.1421172831 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
11 Hb_001266_050 0.1431144263 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
12 Hb_001514_180 0.1441141735 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
13 Hb_010166_020 0.1450577818 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
14 Hb_001012_040 0.1460988551 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]
15 Hb_001741_090 0.1490004661 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
16 Hb_000444_030 0.1501229156 - - PREDICTED: expansin-A20 [Jatropha curcas]
17 Hb_004297_040 0.1503365574 - - acyl CoA reductase [Hevea brasiliensis]
18 Hb_001198_030 0.1505668554 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
19 Hb_001213_120 0.1529260127 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
20 Hb_000078_010 0.153025168 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000300_400 Hb_000300_400 Hb_000603_210 Hb_000603_210 Hb_000300_400--Hb_000603_210 Hb_005539_210 Hb_005539_210 Hb_000300_400--Hb_005539_210 Hb_149683_010 Hb_149683_010 Hb_000300_400--Hb_149683_010 Hb_006816_440 Hb_006816_440 Hb_000300_400--Hb_006816_440 Hb_002235_230 Hb_002235_230 Hb_000300_400--Hb_002235_230 Hb_001723_080 Hb_001723_080 Hb_000300_400--Hb_001723_080 Hb_003777_230 Hb_003777_230 Hb_000603_210--Hb_003777_230 Hb_000603_210--Hb_002235_230 Hb_000603_210--Hb_006816_440 Hb_000444_030 Hb_000444_030 Hb_000603_210--Hb_000444_030 Hb_000603_210--Hb_149683_010 Hb_012395_210 Hb_012395_210 Hb_005539_210--Hb_012395_210 Hb_001012_040 Hb_001012_040 Hb_005539_210--Hb_001012_040 Hb_002492_020 Hb_002492_020 Hb_005539_210--Hb_002492_020 Hb_010594_030 Hb_010594_030 Hb_005539_210--Hb_010594_030 Hb_005539_210--Hb_001723_080 Hb_149683_010--Hb_006816_440 Hb_149683_010--Hb_002235_230 Hb_000184_180 Hb_000184_180 Hb_149683_010--Hb_000184_180 Hb_000052_010 Hb_000052_010 Hb_149683_010--Hb_000052_010 Hb_103752_010 Hb_103752_010 Hb_149683_010--Hb_103752_010 Hb_006816_440--Hb_002235_230 Hb_006816_440--Hb_000184_180 Hb_006816_440--Hb_000444_030 Hb_001741_080 Hb_001741_080 Hb_006816_440--Hb_001741_080 Hb_006816_440--Hb_000052_010 Hb_003540_230 Hb_003540_230 Hb_002235_230--Hb_003540_230 Hb_002000_110 Hb_002000_110 Hb_002235_230--Hb_002000_110 Hb_001741_090 Hb_001741_090 Hb_002235_230--Hb_001741_090 Hb_002235_230--Hb_001741_080 Hb_000454_110 Hb_000454_110 Hb_001723_080--Hb_000454_110 Hb_001723_080--Hb_001012_040 Hb_008705_090 Hb_008705_090 Hb_001723_080--Hb_008705_090 Hb_012395_200 Hb_012395_200 Hb_001723_080--Hb_012395_200 Hb_001723_080--Hb_012395_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3861.05 66.0753 32.3426 178.733 3501.08 4258.39
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20415.6 12634.9 9317.65 1584.27 42.9646

CAGE analysis