Hb_000300_430

Information

Type -
Description -
Location Contig300: 376572-381497
Sequence    

Annotation

kegg
ID tcc:TCM_025865
description Double-stranded-RNA-binding protein 4, putative
nr
ID XP_012070414.1
description PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
swissprot
ID Q8H1D4
description Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana GN=DBR4 PE=1 SV=1
trembl
ID A0A067L599
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02690 PE=4 SV=1
Gene Ontology
ID GO:0050896
description double-stranded rna-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31591: 378619-381119 , PASA_asmbl_31592: 378792-381475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_430 0.0 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
2 Hb_003622_040 0.0728679209 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
3 Hb_004800_100 0.0792393829 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000982_080 0.0841774249 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
5 Hb_011344_190 0.0842151239 - - PREDICTED: maspardin [Jatropha curcas]
6 Hb_001123_160 0.0867254711 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_000173_410 0.0880645713 - - PREDICTED: BI1-like protein [Jatropha curcas]
8 Hb_006420_080 0.0898545697 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_004627_030 0.0903680908 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
10 Hb_003360_040 0.0904530587 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
11 Hb_003126_070 0.0912258446 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
12 Hb_001222_080 0.0941918873 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
13 Hb_010883_050 0.0974710103 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
14 Hb_000110_140 0.0977349233 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
15 Hb_000934_190 0.0986358876 - - SER/ARG-rich protein 34A [Theobroma cacao]
16 Hb_008232_010 0.0987125557 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
17 Hb_005488_200 0.0994800268 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
18 Hb_148209_010 0.0999037256 - - RAS-related GTP-binding family protein [Populus trichocarpa]
19 Hb_000419_070 0.1002921345 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
20 Hb_007218_120 0.1007386542 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000300_430 Hb_000300_430 Hb_003622_040 Hb_003622_040 Hb_000300_430--Hb_003622_040 Hb_004800_100 Hb_004800_100 Hb_000300_430--Hb_004800_100 Hb_000982_080 Hb_000982_080 Hb_000300_430--Hb_000982_080 Hb_011344_190 Hb_011344_190 Hb_000300_430--Hb_011344_190 Hb_001123_160 Hb_001123_160 Hb_000300_430--Hb_001123_160 Hb_000173_410 Hb_000173_410 Hb_000300_430--Hb_000173_410 Hb_003622_040--Hb_001123_160 Hb_005054_210 Hb_005054_210 Hb_003622_040--Hb_005054_210 Hb_000934_190 Hb_000934_190 Hb_003622_040--Hb_000934_190 Hb_008232_010 Hb_008232_010 Hb_003622_040--Hb_008232_010 Hb_003622_040--Hb_011344_190 Hb_000252_100 Hb_000252_100 Hb_004800_100--Hb_000252_100 Hb_004627_030 Hb_004627_030 Hb_004800_100--Hb_004627_030 Hb_004800_100--Hb_000173_410 Hb_004800_100--Hb_001123_160 Hb_002045_070 Hb_002045_070 Hb_004800_100--Hb_002045_070 Hb_003376_250 Hb_003376_250 Hb_000982_080--Hb_003376_250 Hb_000982_080--Hb_011344_190 Hb_005488_200 Hb_005488_200 Hb_000982_080--Hb_005488_200 Hb_001195_200 Hb_001195_200 Hb_000982_080--Hb_001195_200 Hb_000982_080--Hb_008232_010 Hb_006420_080 Hb_006420_080 Hb_000982_080--Hb_006420_080 Hb_011344_190--Hb_003376_250 Hb_011344_190--Hb_008232_010 Hb_011344_190--Hb_005488_200 Hb_003633_050 Hb_003633_050 Hb_011344_190--Hb_003633_050 Hb_001222_080 Hb_001222_080 Hb_011344_190--Hb_001222_080 Hb_001123_160--Hb_008232_010 Hb_003291_020 Hb_003291_020 Hb_001123_160--Hb_003291_020 Hb_148209_010 Hb_148209_010 Hb_001123_160--Hb_148209_010 Hb_000563_200 Hb_000563_200 Hb_001123_160--Hb_000563_200 Hb_000454_090 Hb_000454_090 Hb_000173_410--Hb_000454_090 Hb_000173_410--Hb_000252_100 Hb_000220_100 Hb_000220_100 Hb_000173_410--Hb_000220_100 Hb_000359_060 Hb_000359_060 Hb_000173_410--Hb_000359_060 Hb_005765_050 Hb_005765_050 Hb_000173_410--Hb_005765_050 Hb_004078_040 Hb_004078_040 Hb_000173_410--Hb_004078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95297 4.33241 4.48592 10.8354 3.21327 2.28114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0687 11.6679 10.5967 7.84473 6.54906

CAGE analysis