Hb_000300_440

Information

Type -
Description -
Location Contig300: 381721-388230
Sequence    

Annotation

kegg
ID tcc:TCM_025866
description MIF4G domain and MA3 domain-containing protein isoform 1
nr
ID XP_007030027.1
description MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
swissprot
ID Q3UFM5
description Nucleolar MIF4G domain-containing protein 1 OS=Mus musculus GN=Nom1 PE=2 SV=2
trembl
ID A0A061F7P1
description MIF4G domain and MA3 domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_025866 PE=4 SV=1
Gene Ontology
ID GO:0003723
description nucleolar mif4g domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31593: 381791-383063 , PASA_asmbl_31594: 383817-384654 , PASA_asmbl_31595: 384960-386615 , PASA_asmbl_31596: 384960-386069 , PASA_asmbl_31598: 387128-387532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_440 0.0 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
2 Hb_000109_100 0.0635672975 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
3 Hb_000343_030 0.0654311153 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
4 Hb_003952_150 0.0665733973 - - PREDICTED: cactin [Jatropha curcas]
5 Hb_100215_010 0.0677314413 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
6 Hb_001172_010 0.0723588583 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
7 Hb_007307_020 0.073053129 - - DNA binding protein, putative [Ricinus communis]
8 Hb_010381_060 0.0745023271 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
9 Hb_002078_100 0.0748255655 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
10 Hb_001541_080 0.0749687254 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000505_020 0.075117908 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
12 Hb_003464_020 0.0772989208 - - srpk, putative [Ricinus communis]
13 Hb_002235_160 0.0777692114 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
14 Hb_000920_210 0.0796952725 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
15 Hb_000023_190 0.0798987701 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
16 Hb_003362_070 0.081244706 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
17 Hb_033834_060 0.0817650752 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
18 Hb_000470_070 0.0829584106 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
19 Hb_003299_070 0.0833014463 - - AMP deaminase [Theobroma cacao]
20 Hb_000029_130 0.0836148423 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_440 Hb_000300_440 Hb_000109_100 Hb_000109_100 Hb_000300_440--Hb_000109_100 Hb_000343_030 Hb_000343_030 Hb_000300_440--Hb_000343_030 Hb_003952_150 Hb_003952_150 Hb_000300_440--Hb_003952_150 Hb_100215_010 Hb_100215_010 Hb_000300_440--Hb_100215_010 Hb_001172_010 Hb_001172_010 Hb_000300_440--Hb_001172_010 Hb_007307_020 Hb_007307_020 Hb_000300_440--Hb_007307_020 Hb_000505_020 Hb_000505_020 Hb_000109_100--Hb_000505_020 Hb_000160_290 Hb_000160_290 Hb_000109_100--Hb_000160_290 Hb_002078_100 Hb_002078_100 Hb_000109_100--Hb_002078_100 Hb_001623_480 Hb_001623_480 Hb_000109_100--Hb_001623_480 Hb_003299_070 Hb_003299_070 Hb_000109_100--Hb_003299_070 Hb_004218_030 Hb_004218_030 Hb_000343_030--Hb_004218_030 Hb_000343_030--Hb_100215_010 Hb_000343_030--Hb_003952_150 Hb_001621_130 Hb_001621_130 Hb_000343_030--Hb_001621_130 Hb_000920_210 Hb_000920_210 Hb_000343_030--Hb_000920_210 Hb_016898_010 Hb_016898_010 Hb_003952_150--Hb_016898_010 Hb_000084_120 Hb_000084_120 Hb_003952_150--Hb_000084_120 Hb_003952_150--Hb_000920_210 Hb_003362_070 Hb_003362_070 Hb_003952_150--Hb_003362_070 Hb_010381_060 Hb_010381_060 Hb_003952_150--Hb_010381_060 Hb_000320_200 Hb_000320_200 Hb_003952_150--Hb_000320_200 Hb_000983_150 Hb_000983_150 Hb_100215_010--Hb_000983_150 Hb_004689_050 Hb_004689_050 Hb_100215_010--Hb_004689_050 Hb_100215_010--Hb_003362_070 Hb_000023_190 Hb_000023_190 Hb_100215_010--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_001172_010--Hb_009627_010 Hb_002304_090 Hb_002304_090 Hb_001172_010--Hb_002304_090 Hb_004429_100 Hb_004429_100 Hb_001172_010--Hb_004429_100 Hb_033834_060 Hb_033834_060 Hb_001172_010--Hb_033834_060 Hb_007520_030 Hb_007520_030 Hb_001172_010--Hb_007520_030 Hb_000160_040 Hb_000160_040 Hb_001172_010--Hb_000160_040 Hb_048476_180 Hb_048476_180 Hb_007307_020--Hb_048476_180 Hb_001143_250 Hb_001143_250 Hb_007307_020--Hb_001143_250 Hb_001599_030 Hb_001599_030 Hb_007307_020--Hb_001599_030 Hb_027380_140 Hb_027380_140 Hb_007307_020--Hb_027380_140 Hb_002235_160 Hb_002235_160 Hb_007307_020--Hb_002235_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1442 10.6953 6.73661 6.52239 15.7851 18.771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9945 5.35246 7.98629 15.909 8.22387

CAGE analysis