Hb_000300_500

Information

Type -
Description -
Location Contig300: 452905-457395
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05350g
description POPTRDRAFT_573950; RNA recognition motif-containing family protein
nr
ID XP_012070421.1
description PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
swissprot
ID Q9LFD5
description Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1
trembl
ID A0A067L6H7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02699 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna recognition motif-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31605: 453016-457402 , PASA_asmbl_31606: 453017-453126 , PASA_asmbl_31607: 456481-456872
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_500 0.0 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
2 Hb_006455_120 0.0547348748 - - n6-DNA-methyltransferase, putative [Ricinus communis]
3 Hb_000720_040 0.056952821 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
4 Hb_000637_110 0.0654573443 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
5 Hb_002754_010 0.0672514377 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
6 Hb_001159_130 0.0679814266 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
7 Hb_000603_150 0.0687345101 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
8 Hb_013575_010 0.0698815282 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
9 Hb_164010_040 0.0701493765 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_001473_160 0.0706304564 - - Vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_001300_150 0.0707237744 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
12 Hb_000948_230 0.0708130799 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_000349_260 0.07308849 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
14 Hb_001511_060 0.0734245345 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
15 Hb_000465_160 0.0743111817 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
16 Hb_000926_090 0.0757835989 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
17 Hb_000260_350 0.0760523624 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002681_100 0.0777830446 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
19 Hb_000580_180 0.0785743475 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000375_350 0.0787606619 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_500 Hb_000300_500 Hb_006455_120 Hb_006455_120 Hb_000300_500--Hb_006455_120 Hb_000720_040 Hb_000720_040 Hb_000300_500--Hb_000720_040 Hb_000637_110 Hb_000637_110 Hb_000300_500--Hb_000637_110 Hb_002754_010 Hb_002754_010 Hb_000300_500--Hb_002754_010 Hb_001159_130 Hb_001159_130 Hb_000300_500--Hb_001159_130 Hb_000603_150 Hb_000603_150 Hb_000300_500--Hb_000603_150 Hb_006634_070 Hb_006634_070 Hb_006455_120--Hb_006634_070 Hb_011037_030 Hb_011037_030 Hb_006455_120--Hb_011037_030 Hb_006455_120--Hb_000603_150 Hb_000580_180 Hb_000580_180 Hb_006455_120--Hb_000580_180 Hb_000156_010 Hb_000156_010 Hb_006455_120--Hb_000156_010 Hb_003994_230 Hb_003994_230 Hb_000720_040--Hb_003994_230 Hb_052805_010 Hb_052805_010 Hb_000720_040--Hb_052805_010 Hb_002936_010 Hb_002936_010 Hb_000720_040--Hb_002936_010 Hb_000948_230 Hb_000948_230 Hb_000720_040--Hb_000948_230 Hb_000783_010 Hb_000783_010 Hb_000720_040--Hb_000783_010 Hb_000349_260 Hb_000349_260 Hb_000637_110--Hb_000349_260 Hb_005137_040 Hb_005137_040 Hb_000637_110--Hb_005137_040 Hb_001473_160 Hb_001473_160 Hb_000637_110--Hb_001473_160 Hb_000088_170 Hb_000088_170 Hb_000637_110--Hb_000088_170 Hb_000637_110--Hb_006455_120 Hb_164010_040 Hb_164010_040 Hb_002754_010--Hb_164010_040 Hb_000331_550 Hb_000331_550 Hb_002754_010--Hb_000331_550 Hb_000926_090 Hb_000926_090 Hb_002754_010--Hb_000926_090 Hb_065525_040 Hb_065525_040 Hb_002754_010--Hb_065525_040 Hb_013358_040 Hb_013358_040 Hb_002754_010--Hb_013358_040 Hb_001300_150 Hb_001300_150 Hb_002754_010--Hb_001300_150 Hb_000116_270 Hb_000116_270 Hb_001159_130--Hb_000116_270 Hb_155159_020 Hb_155159_020 Hb_001159_130--Hb_155159_020 Hb_003177_030 Hb_003177_030 Hb_001159_130--Hb_003177_030 Hb_001159_130--Hb_000603_150 Hb_000200_020 Hb_000200_020 Hb_001159_130--Hb_000200_020 Hb_000019_030 Hb_000019_030 Hb_001159_130--Hb_000019_030 Hb_000205_300 Hb_000205_300 Hb_000603_150--Hb_000205_300 Hb_000120_670 Hb_000120_670 Hb_000603_150--Hb_000120_670 Hb_000603_150--Hb_000580_180 Hb_003549_150 Hb_003549_150 Hb_000603_150--Hb_003549_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.7099 30.6937 49.1874 54.7507 31.1801 43.2875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.0619 45.7463 51.8939 36.223 25.7876

CAGE analysis