Hb_000300_540

Information

Type -
Description -
Location Contig300: 509146-515036
Sequence    

Annotation

kegg
ID rcu:RCOM_1322390
description syntaxin, putative
nr
ID XP_012070427.1
description PREDICTED: syntaxin-132 [Jatropha curcas]
swissprot
ID Q9SRV7
description Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=3 SV=1
trembl
ID A0A067L5B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02705 PE=3 SV=1
Gene Ontology
ID GO:0005622
description syntaxin-132-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31616: 509188-514984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_540 0.0 - - PREDICTED: syntaxin-132 [Jatropha curcas]
2 Hb_007786_010 0.0843994105 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
3 Hb_004032_460 0.0866467603 - - -
4 Hb_000062_230 0.091890647 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
5 Hb_002172_030 0.094242821 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
6 Hb_000363_340 0.0964181054 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
7 Hb_000173_370 0.0968855559 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
8 Hb_000392_280 0.0969365638 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
9 Hb_006029_010 0.0976717483 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
10 Hb_003506_040 0.0984289161 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
11 Hb_007111_040 0.1011071305 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
12 Hb_000088_180 0.1015910785 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
13 Hb_000491_080 0.1018915115 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
14 Hb_009421_100 0.1025670447 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
15 Hb_000692_260 0.1027168538 - - PREDICTED: uncharacterized protein LOC105635282 [Jatropha curcas]
16 Hb_000365_350 0.1049612237 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
17 Hb_000050_120 0.1050025565 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
18 Hb_005725_070 0.1056389493 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002025_140 0.1090839327 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
20 Hb_006478_070 0.1101974266 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_540 Hb_000300_540 Hb_007786_010 Hb_007786_010 Hb_000300_540--Hb_007786_010 Hb_004032_460 Hb_004032_460 Hb_000300_540--Hb_004032_460 Hb_000062_230 Hb_000062_230 Hb_000300_540--Hb_000062_230 Hb_002172_030 Hb_002172_030 Hb_000300_540--Hb_002172_030 Hb_000363_340 Hb_000363_340 Hb_000300_540--Hb_000363_340 Hb_000173_370 Hb_000173_370 Hb_000300_540--Hb_000173_370 Hb_002818_040 Hb_002818_040 Hb_007786_010--Hb_002818_040 Hb_012977_010 Hb_012977_010 Hb_007786_010--Hb_012977_010 Hb_009421_100 Hb_009421_100 Hb_007786_010--Hb_009421_100 Hb_006029_010 Hb_006029_010 Hb_007786_010--Hb_006029_010 Hb_005725_070 Hb_005725_070 Hb_007786_010--Hb_005725_070 Hb_000088_180 Hb_000088_180 Hb_004032_460--Hb_000088_180 Hb_004032_460--Hb_000173_370 Hb_000365_350 Hb_000365_350 Hb_004032_460--Hb_000365_350 Hb_000849_150 Hb_000849_150 Hb_004032_460--Hb_000849_150 Hb_004032_460--Hb_000363_340 Hb_002044_090 Hb_002044_090 Hb_000062_230--Hb_002044_090 Hb_002377_040 Hb_002377_040 Hb_000062_230--Hb_002377_040 Hb_005754_020 Hb_005754_020 Hb_000062_230--Hb_005754_020 Hb_004374_010 Hb_004374_010 Hb_000062_230--Hb_004374_010 Hb_003352_050 Hb_003352_050 Hb_000062_230--Hb_003352_050 Hb_004813_010 Hb_004813_010 Hb_000062_230--Hb_004813_010 Hb_012654_020 Hb_012654_020 Hb_002172_030--Hb_012654_020 Hb_001846_080 Hb_001846_080 Hb_002172_030--Hb_001846_080 Hb_005410_010 Hb_005410_010 Hb_002172_030--Hb_005410_010 Hb_000050_120 Hb_000050_120 Hb_002172_030--Hb_000050_120 Hb_011609_190 Hb_011609_190 Hb_002172_030--Hb_011609_190 Hb_154381_050 Hb_154381_050 Hb_002172_030--Hb_154381_050 Hb_000392_280 Hb_000392_280 Hb_000363_340--Hb_000392_280 Hb_001016_060 Hb_001016_060 Hb_000363_340--Hb_001016_060 Hb_000363_340--Hb_012977_010 Hb_000363_340--Hb_005725_070 Hb_001498_030 Hb_001498_030 Hb_000363_340--Hb_001498_030 Hb_002025_140 Hb_002025_140 Hb_000173_370--Hb_002025_140 Hb_000173_370--Hb_000088_180 Hb_004531_090 Hb_004531_090 Hb_000173_370--Hb_004531_090 Hb_000573_040 Hb_000573_040 Hb_000173_370--Hb_000573_040 Hb_000173_210 Hb_000173_210 Hb_000173_370--Hb_000173_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
526.181 51.5768 67.423 48.54 538.796 373.618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
172.048 121.804 164.834 56.898 16.3453

CAGE analysis