Hb_000300_580

Information

Type -
Description -
Location Contig300: 543941-553564
Sequence    

Annotation

kegg
ID rcu:RCOM_1120720
description importin beta-3, putative
nr
ID XP_012070433.1
description PREDICTED: importin-5-like [Jatropha curcas]
swissprot
ID Q8BKC5
description Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3
trembl
ID A0A067L6I9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02709 PE=4 SV=1
Gene Ontology
ID GO:0005622
description importin-5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31624: 547957-549645 , PASA_asmbl_31625: 552748-553321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_580 0.0 - - PREDICTED: importin-5-like [Jatropha curcas]
2 Hb_001437_100 0.0569121744 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
3 Hb_002043_170 0.0688588889 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
4 Hb_000335_010 0.0766645044 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_002883_010 0.0816605033 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
6 Hb_000250_070 0.0829691285 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
7 Hb_000329_490 0.0834697696 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
8 Hb_000475_020 0.0854149121 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
9 Hb_001863_110 0.0863424814 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
10 Hb_046615_020 0.0878128558 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
11 Hb_000170_190 0.0885375223 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
12 Hb_004218_240 0.0885401038 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
13 Hb_002291_070 0.088990745 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
14 Hb_031754_010 0.0892499235 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
15 Hb_003406_040 0.0896731696 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
16 Hb_000317_440 0.0899454348 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
17 Hb_000136_150 0.0905102014 - - hypothetical protein VITISV_038366 [Vitis vinifera]
18 Hb_000003_790 0.0906275253 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
19 Hb_002493_090 0.0906815609 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
20 Hb_000029_320 0.0920467532 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_580 Hb_000300_580 Hb_001437_100 Hb_001437_100 Hb_000300_580--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_000300_580--Hb_002043_170 Hb_000335_010 Hb_000335_010 Hb_000300_580--Hb_000335_010 Hb_002883_010 Hb_002883_010 Hb_000300_580--Hb_002883_010 Hb_000250_070 Hb_000250_070 Hb_000300_580--Hb_000250_070 Hb_000329_490 Hb_000329_490 Hb_000300_580--Hb_000329_490 Hb_001437_100--Hb_002043_170 Hb_001437_100--Hb_002883_010 Hb_000317_440 Hb_000317_440 Hb_001437_100--Hb_000317_440 Hb_001437_100--Hb_000335_010 Hb_000096_180 Hb_000096_180 Hb_001437_100--Hb_000096_180 Hb_000640_320 Hb_000640_320 Hb_002043_170--Hb_000640_320 Hb_046615_020 Hb_046615_020 Hb_002043_170--Hb_046615_020 Hb_002043_170--Hb_002883_010 Hb_000035_040 Hb_000035_040 Hb_002043_170--Hb_000035_040 Hb_002043_170--Hb_000335_010 Hb_031754_010 Hb_031754_010 Hb_000335_010--Hb_031754_010 Hb_000457_060 Hb_000457_060 Hb_000335_010--Hb_000457_060 Hb_000789_080 Hb_000789_080 Hb_000335_010--Hb_000789_080 Hb_000335_010--Hb_002883_010 Hb_002883_010--Hb_000317_440 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_000239_070 Hb_000239_070 Hb_002883_010--Hb_000239_070 Hb_007849_020 Hb_007849_020 Hb_000250_070--Hb_007849_020 Hb_000475_020 Hb_000475_020 Hb_000250_070--Hb_000475_020 Hb_002471_210 Hb_002471_210 Hb_000250_070--Hb_002471_210 Hb_002291_070 Hb_002291_070 Hb_000250_070--Hb_002291_070 Hb_006816_300 Hb_006816_300 Hb_000250_070--Hb_006816_300 Hb_001811_120 Hb_001811_120 Hb_000250_070--Hb_001811_120 Hb_022250_110 Hb_022250_110 Hb_000329_490--Hb_022250_110 Hb_006114_020 Hb_006114_020 Hb_000329_490--Hb_006114_020 Hb_000029_320 Hb_000029_320 Hb_000329_490--Hb_000029_320 Hb_006882_010 Hb_006882_010 Hb_000329_490--Hb_006882_010 Hb_002070_070 Hb_002070_070 Hb_000329_490--Hb_002070_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9334 9.66366 4.38496 6.66891 28.1648 32.0261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9208 5.54833 9.36205 7.91909 11.3148

CAGE analysis