Hb_000300_590

Information

Type transcription factor
Description TF Family: ERF
Location Contig300: 556048-556869
Sequence    

Annotation

kegg
ID pop:POPTR_0013s05330g
description POPTRDRAFT_806942; hypothetical protein
nr
ID XP_012070434.1
description PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
swissprot
ID Q6J9S1
description Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1
trembl
ID A0A067L5C6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02710 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor rap2-11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_590 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
2 Hb_003602_070 0.1635104296 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
3 Hb_116478_010 0.1672264024 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
4 Hb_032225_040 0.1812984409 - - -
5 Hb_000032_560 0.1842930693 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
6 Hb_000580_070 0.1865901076 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
7 Hb_002762_090 0.1890889501 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_009545_010 0.1966477593 transcription factor TF Family: GNAT Acetyltransferase [Medicago truncatula]
9 Hb_000915_070 0.1999585689 - - ATP binding protein, putative [Ricinus communis]
10 Hb_008692_020 0.1999642287 - - -
11 Hb_001678_030 0.2003734217 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
12 Hb_002182_050 0.2031044687 - - hypothetical protein CICLE_v10022654mg [Citrus clementina]
13 Hb_025254_020 0.2038036621 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
14 Hb_159015_010 0.2046514529 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_001105_200 0.2088740412 - - catalytic, putative [Ricinus communis]
16 Hb_003399_030 0.2102435958 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
17 Hb_000098_310 0.2107691993 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
18 Hb_002835_350 0.2111481798 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
19 Hb_004881_060 0.2121741287 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
20 Hb_018133_110 0.213377844 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000300_590 Hb_000300_590 Hb_003602_070 Hb_003602_070 Hb_000300_590--Hb_003602_070 Hb_116478_010 Hb_116478_010 Hb_000300_590--Hb_116478_010 Hb_032225_040 Hb_032225_040 Hb_000300_590--Hb_032225_040 Hb_000032_560 Hb_000032_560 Hb_000300_590--Hb_000032_560 Hb_000580_070 Hb_000580_070 Hb_000300_590--Hb_000580_070 Hb_002762_090 Hb_002762_090 Hb_000300_590--Hb_002762_090 Hb_000915_070 Hb_000915_070 Hb_003602_070--Hb_000915_070 Hb_003602_070--Hb_000580_070 Hb_001678_030 Hb_001678_030 Hb_003602_070--Hb_001678_030 Hb_000181_160 Hb_000181_160 Hb_003602_070--Hb_000181_160 Hb_002304_140 Hb_002304_140 Hb_003602_070--Hb_002304_140 Hb_159015_010 Hb_159015_010 Hb_116478_010--Hb_159015_010 Hb_005064_040 Hb_005064_040 Hb_116478_010--Hb_005064_040 Hb_002182_050 Hb_002182_050 Hb_116478_010--Hb_002182_050 Hb_000497_120 Hb_000497_120 Hb_116478_010--Hb_000497_120 Hb_116478_010--Hb_000032_560 Hb_006120_010 Hb_006120_010 Hb_116478_010--Hb_006120_010 Hb_011200_020 Hb_011200_020 Hb_032225_040--Hb_011200_020 Hb_000138_020 Hb_000138_020 Hb_032225_040--Hb_000138_020 Hb_000098_310 Hb_000098_310 Hb_032225_040--Hb_000098_310 Hb_002835_350 Hb_002835_350 Hb_032225_040--Hb_002835_350 Hb_032631_050 Hb_032631_050 Hb_032225_040--Hb_032631_050 Hb_018133_110 Hb_018133_110 Hb_000032_560--Hb_018133_110 Hb_000032_560--Hb_000580_070 Hb_118707_020 Hb_118707_020 Hb_000032_560--Hb_118707_020 Hb_002597_010 Hb_002597_010 Hb_000032_560--Hb_002597_010 Hb_135811_040 Hb_135811_040 Hb_000032_560--Hb_135811_040 Hb_000276_030 Hb_000276_030 Hb_000032_560--Hb_000276_030 Hb_000580_070--Hb_018133_110 Hb_002749_070 Hb_002749_070 Hb_000580_070--Hb_002749_070 Hb_000487_240 Hb_000487_240 Hb_000580_070--Hb_000487_240 Hb_000025_740 Hb_000025_740 Hb_000580_070--Hb_000025_740 Hb_032050_050 Hb_032050_050 Hb_000580_070--Hb_032050_050 Hb_002762_090--Hb_116478_010 Hb_001758_120 Hb_001758_120 Hb_002762_090--Hb_001758_120 Hb_025254_020 Hb_025254_020 Hb_002762_090--Hb_025254_020 Hb_002475_070 Hb_002475_070 Hb_002762_090--Hb_002475_070 Hb_002016_020 Hb_002016_020 Hb_002762_090--Hb_002016_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.084949 0.427992 0.0451379 0.695047 0.0531158 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130221 0.102396 0 2.38096 0.206094

CAGE analysis