Hb_000300_620

Information

Type -
Description -
Location Contig300: 572388-576463
Sequence    

Annotation

kegg
ID rcu:RCOM_1120960
description eukaryotic translation initiation factor 4e type, putative
nr
ID XP_012070439.1
description PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
swissprot
ID Q9FK59
description Eukaryotic translation initiation factor NCBP OS=Arabidopsis thaliana GN=NCBP PE=2 SV=1
trembl
ID A0A067KXK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02713 PE=3 SV=1
Gene Ontology
ID GO:0005829
description cap-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31630: 572471-576454 , PASA_asmbl_31631: 572476-576393
cDNA
(Sanger)
(ID:Location)		 030_K14.ab1: 572733-576454

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_620 0.0 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
2 Hb_009382_020 0.0789792451 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
3 Hb_001981_090 0.08272326 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
4 Hb_001518_020 0.0963868565 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
5 Hb_000809_040 0.0979113261 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
6 Hb_004223_130 0.1030184603 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010710_030 0.1060728847 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
8 Hb_000665_040 0.1073774758 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
9 Hb_002890_280 0.1097870237 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
10 Hb_000805_090 0.1103964277 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
11 Hb_003861_080 0.1105591845 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
12 Hb_001671_080 0.1110261487 - - amino acid binding protein, putative [Ricinus communis]
13 Hb_000975_290 0.1112032341 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
14 Hb_008066_010 0.1132568617 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
15 Hb_001157_030 0.1144924098 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]
16 Hb_000134_350 0.1152339848 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
17 Hb_003086_020 0.117594999 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
18 Hb_004108_050 0.1182121612 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
19 Hb_000856_340 0.1183726699 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
20 Hb_008695_190 0.1186338951 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_620 Hb_000300_620 Hb_009382_020 Hb_009382_020 Hb_000300_620--Hb_009382_020 Hb_001981_090 Hb_001981_090 Hb_000300_620--Hb_001981_090 Hb_001518_020 Hb_001518_020 Hb_000300_620--Hb_001518_020 Hb_000809_040 Hb_000809_040 Hb_000300_620--Hb_000809_040 Hb_004223_130 Hb_004223_130 Hb_000300_620--Hb_004223_130 Hb_010710_030 Hb_010710_030 Hb_000300_620--Hb_010710_030 Hb_000138_040 Hb_000138_040 Hb_009382_020--Hb_000138_040 Hb_000483_350 Hb_000483_350 Hb_009382_020--Hb_000483_350 Hb_001157_030 Hb_001157_030 Hb_009382_020--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_009382_020--Hb_005062_070 Hb_002890_280 Hb_002890_280 Hb_009382_020--Hb_002890_280 Hb_005357_150 Hb_005357_150 Hb_001981_090--Hb_005357_150 Hb_001366_220 Hb_001366_220 Hb_001981_090--Hb_001366_220 Hb_001981_090--Hb_000809_040 Hb_000983_100 Hb_000983_100 Hb_001981_090--Hb_000983_100 Hb_002357_040 Hb_002357_040 Hb_001981_090--Hb_002357_040 Hb_000805_090 Hb_000805_090 Hb_001981_090--Hb_000805_090 Hb_000856_340 Hb_000856_340 Hb_001518_020--Hb_000856_340 Hb_001518_020--Hb_000809_040 Hb_000163_290 Hb_000163_290 Hb_001518_020--Hb_000163_290 Hb_031089_010 Hb_031089_010 Hb_001518_020--Hb_031089_010 Hb_001518_020--Hb_009382_020 Hb_000809_040--Hb_001366_220 Hb_000313_380 Hb_000313_380 Hb_000809_040--Hb_000313_380 Hb_004882_020 Hb_004882_020 Hb_000809_040--Hb_004882_020 Hb_000085_310 Hb_000085_310 Hb_000809_040--Hb_000085_310 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140 Hb_000017_120 Hb_000017_120 Hb_004223_130--Hb_000017_120 Hb_158092_070 Hb_158092_070 Hb_004223_130--Hb_158092_070 Hb_001671_080 Hb_001671_080 Hb_004223_130--Hb_001671_080 Hb_133271_020 Hb_133271_020 Hb_004223_130--Hb_133271_020 Hb_001030_120 Hb_001030_120 Hb_004223_130--Hb_001030_120 Hb_002272_250 Hb_002272_250 Hb_004223_130--Hb_002272_250 Hb_000115_060 Hb_000115_060 Hb_010710_030--Hb_000115_060 Hb_008066_010 Hb_008066_010 Hb_010710_030--Hb_008066_010 Hb_010710_030--Hb_004223_130 Hb_002681_110 Hb_002681_110 Hb_010710_030--Hb_002681_110 Hb_000696_110 Hb_000696_110 Hb_010710_030--Hb_000696_110 Hb_010710_030--Hb_001671_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
540.67 114.611 37.655 46.8513 313.492 342.698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
469.991 319.233 507.977 235.324 27.5883

CAGE analysis