Hb_000301_030

Information

Type -
Description -
Location Contig301: 147150-148913
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35960g
description POPTRDRAFT_815540; pectate lyase family protein
nr
ID XP_012071502.1
description PREDICTED: pectate lyase-like [Jatropha curcas]
swissprot
ID Q93Z25
description Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1
trembl
ID A0A067LD99
description Pectate lyase OS=Jatropha curcas GN=JCGZ_10207 PE=3 SV=1
Gene Ontology
ID GO:0030570
description pectate lyase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000301_030 0.0 - - PREDICTED: pectate lyase-like [Jatropha curcas]
2 Hb_003855_070 0.0667942549 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
3 Hb_005356_010 0.0703512632 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
4 Hb_012660_010 0.0821133506 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
5 Hb_107258_010 0.0854865516 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
6 Hb_000648_120 0.0893705837 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
7 Hb_011486_030 0.0919321831 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
8 Hb_001544_040 0.0948682365 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
9 Hb_001218_020 0.0999524238 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
10 Hb_000120_710 0.1012907686 - - unnamed protein product [Vitis vinifera]
11 Hb_000076_200 0.1013693528 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000281_200 0.1030502343 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
13 Hb_001863_290 0.1045825215 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
14 Hb_045992_010 0.1049756299 - - -
15 Hb_004564_010 0.105619952 - - receptor-kinase, putative [Ricinus communis]
16 Hb_001288_010 0.1078490927 - - -
17 Hb_000005_270 0.1083282613 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
18 Hb_178389_020 0.1096607986 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
19 Hb_020332_040 0.1100138516 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
20 Hb_001442_080 0.1119425529 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]

Gene co-expression network

sample Hb_000301_030 Hb_000301_030 Hb_003855_070 Hb_003855_070 Hb_000301_030--Hb_003855_070 Hb_005356_010 Hb_005356_010 Hb_000301_030--Hb_005356_010 Hb_012660_010 Hb_012660_010 Hb_000301_030--Hb_012660_010 Hb_107258_010 Hb_107258_010 Hb_000301_030--Hb_107258_010 Hb_000648_120 Hb_000648_120 Hb_000301_030--Hb_000648_120 Hb_011486_030 Hb_011486_030 Hb_000301_030--Hb_011486_030 Hb_025526_090 Hb_025526_090 Hb_003855_070--Hb_025526_090 Hb_000120_710 Hb_000120_710 Hb_003855_070--Hb_000120_710 Hb_001328_110 Hb_001328_110 Hb_003855_070--Hb_001328_110 Hb_003855_070--Hb_107258_010 Hb_000003_470 Hb_000003_470 Hb_003855_070--Hb_000003_470 Hb_007527_020 Hb_007527_020 Hb_005356_010--Hb_007527_020 Hb_000281_200 Hb_000281_200 Hb_005356_010--Hb_000281_200 Hb_178389_020 Hb_178389_020 Hb_005356_010--Hb_178389_020 Hb_001544_040 Hb_001544_040 Hb_005356_010--Hb_001544_040 Hb_001288_010 Hb_001288_010 Hb_005356_010--Hb_001288_010 Hb_020332_040 Hb_020332_040 Hb_012660_010--Hb_020332_040 Hb_012660_010--Hb_107258_010 Hb_012660_010--Hb_011486_030 Hb_012660_010--Hb_001288_010 Hb_001863_290 Hb_001863_290 Hb_012660_010--Hb_001863_290 Hb_107258_010--Hb_001863_290 Hb_001442_080 Hb_001442_080 Hb_107258_010--Hb_001442_080 Hb_011824_010 Hb_011824_010 Hb_107258_010--Hb_011824_010 Hb_004564_010 Hb_004564_010 Hb_107258_010--Hb_004564_010 Hb_010712_020 Hb_010712_020 Hb_107258_010--Hb_010712_020 Hb_000648_120--Hb_000281_200 Hb_000245_140 Hb_000245_140 Hb_000648_120--Hb_000245_140 Hb_000648_120--Hb_020332_040 Hb_000135_050 Hb_000135_050 Hb_000648_120--Hb_000135_050 Hb_000648_120--Hb_001544_040 Hb_011486_030--Hb_020332_040 Hb_027141_010 Hb_027141_010 Hb_011486_030--Hb_027141_010 Hb_000076_200 Hb_000076_200 Hb_011486_030--Hb_000076_200 Hb_011486_030--Hb_001288_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.207953 7.36887 0.607387 7.20083 0.026013 0.0261224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 77.9239 1.04106

CAGE analysis