Hb_000302_090

Information

Type -
Description -
Location Contig302: 75335-77083
Sequence    

Annotation

kegg
ID pmum:103333704
description protein SGT1 homolog
nr
ID XP_008234820.1
description PREDICTED: protein SGT1 homolog [Prunus mume]
swissprot
ID Q0JL44
description Protein SGT1 homolog OS=Oryza sativa subsp. japonica GN=SGT1 PE=1 SV=1
trembl
ID A0A067JEI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26038 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_090 0.0 - - PREDICTED: protein SGT1 homolog [Prunus mume]
2 Hb_003992_230 0.1921122238 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
3 Hb_002284_180 0.245613044 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
4 Hb_011437_030 0.2506625169 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
5 Hb_001623_090 0.2551450168 - - PREDICTED: probable serine incorporator [Jatropha curcas]
6 Hb_003185_090 0.2789740739 - - Boron transporter, putative [Ricinus communis]
7 Hb_012754_020 0.2800075524 - - PREDICTED: uncharacterized protein LOC104229837 [Nicotiana sylvestris]
8 Hb_111147_010 0.2930225223 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001493_160 0.295539692 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
10 Hb_000926_100 0.2974855682 - - hypothetical protein B456_007G076800 [Gossypium raimondii]
11 Hb_156696_010 0.2977953322 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
12 Hb_004495_020 0.3045388243 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_005725_050 0.3055693842 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
14 Hb_005539_250 0.3075010452 - - -
15 Hb_003050_030 0.3089194879 - - Calcyclin-binding protein, putative [Ricinus communis]
16 Hb_005288_030 0.3089219597 - - PREDICTED: uncharacterized protein LOC105647760 [Jatropha curcas]
17 Hb_036176_010 0.3108079896 - - hypothetical protein CISIN_1g002055mg [Citrus sinensis]
18 Hb_068576_010 0.3113649375 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
19 Hb_006618_080 0.3113947474 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
20 Hb_005062_080 0.3149561636 - - MLO-like protein 4 [Gossypium arboreum]

Gene co-expression network

sample Hb_000302_090 Hb_000302_090 Hb_003992_230 Hb_003992_230 Hb_000302_090--Hb_003992_230 Hb_002284_180 Hb_002284_180 Hb_000302_090--Hb_002284_180 Hb_011437_030 Hb_011437_030 Hb_000302_090--Hb_011437_030 Hb_001623_090 Hb_001623_090 Hb_000302_090--Hb_001623_090 Hb_003185_090 Hb_003185_090 Hb_000302_090--Hb_003185_090 Hb_012754_020 Hb_012754_020 Hb_000302_090--Hb_012754_020 Hb_002232_090 Hb_002232_090 Hb_003992_230--Hb_002232_090 Hb_003992_230--Hb_011437_030 Hb_046417_010 Hb_046417_010 Hb_003992_230--Hb_046417_010 Hb_003992_230--Hb_012754_020 Hb_003992_230--Hb_003185_090 Hb_156696_010 Hb_156696_010 Hb_002284_180--Hb_156696_010 Hb_003562_030 Hb_003562_030 Hb_002284_180--Hb_003562_030 Hb_001047_170 Hb_001047_170 Hb_002284_180--Hb_001047_170 Hb_002301_110 Hb_002301_110 Hb_002284_180--Hb_002301_110 Hb_000676_170 Hb_000676_170 Hb_002284_180--Hb_000676_170 Hb_005489_120 Hb_005489_120 Hb_002284_180--Hb_005489_120 Hb_015970_010 Hb_015970_010 Hb_011437_030--Hb_015970_010 Hb_003055_170 Hb_003055_170 Hb_011437_030--Hb_003055_170 Hb_005699_080 Hb_005699_080 Hb_011437_030--Hb_005699_080 Hb_000192_110 Hb_000192_110 Hb_011437_030--Hb_000192_110 Hb_001623_090--Hb_003185_090 Hb_004162_010 Hb_004162_010 Hb_001623_090--Hb_004162_010 Hb_000926_100 Hb_000926_100 Hb_001623_090--Hb_000926_100 Hb_004495_020 Hb_004495_020 Hb_001623_090--Hb_004495_020 Hb_002025_350 Hb_002025_350 Hb_001623_090--Hb_002025_350 Hb_006788_010 Hb_006788_010 Hb_001623_090--Hb_006788_010 Hb_003185_090--Hb_012754_020 Hb_000227_370 Hb_000227_370 Hb_003185_090--Hb_000227_370 Hb_001022_050 Hb_001022_050 Hb_003185_090--Hb_001022_050 Hb_000914_130 Hb_000914_130 Hb_003185_090--Hb_000914_130 Hb_003185_090--Hb_004162_010 Hb_000985_070 Hb_000985_070 Hb_012754_020--Hb_000985_070 Hb_000302_210 Hb_000302_210 Hb_012754_020--Hb_000302_210 Hb_001493_160 Hb_001493_160 Hb_012754_020--Hb_001493_160 Hb_164162_010 Hb_164162_010 Hb_012754_020--Hb_164162_010 Hb_000125_220 Hb_000125_220 Hb_012754_020--Hb_000125_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171341 0.61812 0.482351 0.919327 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.76385 1.78149 0

CAGE analysis