Hb_000302_100

Information

Type -
Description -
Location Contig302: 79245-81226
Sequence    

Annotation

kegg
ID rcu:RCOM_1339580
description polygalacturonase, putative
nr
ID XP_012441038.1
description PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID T1M5F0
description Uncharacterized protein OS=Triticum urartu PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31777: 80594-82216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_100 0.0 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
2 Hb_066514_010 0.1483408163 - - hypothetical protein RCOM_0204720 [Ricinus communis]
3 Hb_002272_200 0.1575991935 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
4 Hb_001357_030 0.1606248056 - - hypothetical protein F383_04880 [Gossypium arboreum]
5 Hb_160405_010 0.1640840259 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_007575_090 0.1738849866 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
7 Hb_001329_020 0.17440987 - - PREDICTED: probable boron transporter 2 [Populus euphratica]
8 Hb_004117_330 0.1764493989 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011918_010 0.1770640119 - - hypothetical protein glysoja_041948 [Glycine soja]
10 Hb_000733_090 0.1792644615 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
11 Hb_049915_010 0.1792653703 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
12 Hb_000300_230 0.1799336885 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
13 Hb_104571_010 0.1845885954 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
14 Hb_004586_330 0.184841838 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000032_430 0.1852034042 - - conserved hypothetical protein [Ricinus communis]
16 Hb_155541_020 0.1863318406 - - -
17 Hb_000413_080 0.1887255845 - - -
18 Hb_186647_010 0.192241093 - - -
19 Hb_003536_090 0.1965855558 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
20 Hb_002490_030 0.1968593023 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000302_100 Hb_000302_100 Hb_066514_010 Hb_066514_010 Hb_000302_100--Hb_066514_010 Hb_002272_200 Hb_002272_200 Hb_000302_100--Hb_002272_200 Hb_001357_030 Hb_001357_030 Hb_000302_100--Hb_001357_030 Hb_160405_010 Hb_160405_010 Hb_000302_100--Hb_160405_010 Hb_007575_090 Hb_007575_090 Hb_000302_100--Hb_007575_090 Hb_001329_020 Hb_001329_020 Hb_000302_100--Hb_001329_020 Hb_002900_100 Hb_002900_100 Hb_066514_010--Hb_002900_100 Hb_011918_010 Hb_011918_010 Hb_066514_010--Hb_011918_010 Hb_007441_090 Hb_007441_090 Hb_066514_010--Hb_007441_090 Hb_002490_030 Hb_002490_030 Hb_066514_010--Hb_002490_030 Hb_118507_010 Hb_118507_010 Hb_066514_010--Hb_118507_010 Hb_002272_200--Hb_002490_030 Hb_002749_040 Hb_002749_040 Hb_002272_200--Hb_002749_040 Hb_007749_020 Hb_007749_020 Hb_002272_200--Hb_007749_020 Hb_000260_110 Hb_000260_110 Hb_002272_200--Hb_000260_110 Hb_002272_200--Hb_066514_010 Hb_001357_030--Hb_160405_010 Hb_000733_090 Hb_000733_090 Hb_001357_030--Hb_000733_090 Hb_001016_040 Hb_001016_040 Hb_001357_030--Hb_001016_040 Hb_105660_010 Hb_105660_010 Hb_001357_030--Hb_105660_010 Hb_049915_010 Hb_049915_010 Hb_001357_030--Hb_049915_010 Hb_004449_090 Hb_004449_090 Hb_160405_010--Hb_004449_090 Hb_000032_430 Hb_000032_430 Hb_160405_010--Hb_000032_430 Hb_005016_020 Hb_005016_020 Hb_160405_010--Hb_005016_020 Hb_000000_110 Hb_000000_110 Hb_160405_010--Hb_000000_110 Hb_001178_080 Hb_001178_080 Hb_160405_010--Hb_001178_080 Hb_007575_090--Hb_011918_010 Hb_007741_090 Hb_007741_090 Hb_007575_090--Hb_007741_090 Hb_007575_090--Hb_066514_010 Hb_007575_090--Hb_002900_100 Hb_000302_110 Hb_000302_110 Hb_007575_090--Hb_000302_110 Hb_004117_330 Hb_004117_330 Hb_007575_090--Hb_004117_330 Hb_002122_060 Hb_002122_060 Hb_001329_020--Hb_002122_060 Hb_001329_020--Hb_004117_330 Hb_003536_090 Hb_003536_090 Hb_001329_020--Hb_003536_090 Hb_012753_180 Hb_012753_180 Hb_001329_020--Hb_012753_180 Hb_000707_040 Hb_000707_040 Hb_001329_020--Hb_000707_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.259064 0.937682 0.402146 4.01127 0.228233 0.161859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136858 0.179411 0.0663968 0.547272 0.221493

CAGE analysis