Hb_000302_140

Information

Type -
Description -
Location Contig302: 91068-93920
Sequence    

Annotation

kegg
ID rcu:RCOM_1581930
description NADH dehydrogenase, putative (EC:1.6.5.3)
nr
ID XP_012090165.1
description PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
swissprot
ID Q9FLX7
description Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana GN=At5g52840 PE=1 SV=1
trembl
ID B9RIR5
description NADH dehydrogenase, putative OS=Ricinus communis GN=RCOM_1581930 PE=4 SV=1
Gene Ontology
ID GO:0005743
description probable nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31781: 91067-93632
cDNA
(Sanger)
(ID:Location)		 047_H24.ab1: 91114-93605 , 053_I05.ab1: 91142-93605

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_140 0.0 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
2 Hb_000571_020 0.0582760493 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
3 Hb_000538_120 0.0678977983 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
4 Hb_001341_150 0.0795936239 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
5 Hb_000085_350 0.0805245517 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
6 Hb_000413_280 0.0805822768 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
7 Hb_028396_010 0.0805971258 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
8 Hb_024074_010 0.0818849111 - - PREDICTED: cytochrome c [Jatropha curcas]
9 Hb_000731_190 0.0840401731 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
10 Hb_010560_030 0.0866080439 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
11 Hb_000402_160 0.0867533534 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
12 Hb_000189_240 0.0877819051 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
13 Hb_010098_050 0.0891672449 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
14 Hb_001096_090 0.0899446602 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
15 Hb_002228_070 0.0911223108 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
16 Hb_026053_020 0.0919893099 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
17 Hb_003362_030 0.0934249819 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
18 Hb_011609_020 0.0938412505 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007894_060 0.0943924526 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
20 Hb_001329_150 0.0947135336 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]

Gene co-expression network

sample Hb_000302_140 Hb_000302_140 Hb_000571_020 Hb_000571_020 Hb_000302_140--Hb_000571_020 Hb_000538_120 Hb_000538_120 Hb_000302_140--Hb_000538_120 Hb_001341_150 Hb_001341_150 Hb_000302_140--Hb_001341_150 Hb_000085_350 Hb_000085_350 Hb_000302_140--Hb_000085_350 Hb_000413_280 Hb_000413_280 Hb_000302_140--Hb_000413_280 Hb_028396_010 Hb_028396_010 Hb_000302_140--Hb_028396_010 Hb_001329_150 Hb_001329_150 Hb_000571_020--Hb_001329_150 Hb_000571_020--Hb_000538_120 Hb_000254_050 Hb_000254_050 Hb_000571_020--Hb_000254_050 Hb_000189_240 Hb_000189_240 Hb_000571_020--Hb_000189_240 Hb_000731_190 Hb_000731_190 Hb_000571_020--Hb_000731_190 Hb_007894_060 Hb_007894_060 Hb_000538_120--Hb_007894_060 Hb_000136_260 Hb_000136_260 Hb_000538_120--Hb_000136_260 Hb_007928_030 Hb_007928_030 Hb_000538_120--Hb_007928_030 Hb_000538_120--Hb_000413_280 Hb_001931_010 Hb_001931_010 Hb_001341_150--Hb_001931_010 Hb_010098_050 Hb_010098_050 Hb_001341_150--Hb_010098_050 Hb_006615_240 Hb_006615_240 Hb_001341_150--Hb_006615_240 Hb_000457_180 Hb_000457_180 Hb_001341_150--Hb_000457_180 Hb_002078_140 Hb_002078_140 Hb_001341_150--Hb_002078_140 Hb_001341_150--Hb_028396_010 Hb_007747_050 Hb_007747_050 Hb_000085_350--Hb_007747_050 Hb_000085_350--Hb_000538_120 Hb_000735_090 Hb_000735_090 Hb_000085_350--Hb_000735_090 Hb_000155_160 Hb_000155_160 Hb_000085_350--Hb_000155_160 Hb_002811_170 Hb_002811_170 Hb_000085_350--Hb_002811_170 Hb_011671_440 Hb_011671_440 Hb_000413_280--Hb_011671_440 Hb_002016_080 Hb_002016_080 Hb_000413_280--Hb_002016_080 Hb_000413_280--Hb_000571_020 Hb_004705_080 Hb_004705_080 Hb_000413_280--Hb_004705_080 Hb_000045_310 Hb_000045_310 Hb_028396_010--Hb_000045_310 Hb_008071_020 Hb_008071_020 Hb_028396_010--Hb_008071_020 Hb_028396_010--Hb_001931_010 Hb_028396_010--Hb_000189_240 Hb_001279_080 Hb_001279_080 Hb_028396_010--Hb_001279_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2357 12.939 32.7482 26.7661 13.7874 10.7126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.2045 58.488 30.0056 27.5767 15.7835

CAGE analysis