Hb_000302_180

Information

Type -
Description -
Location Contig302: 132201-134904
Sequence    

Annotation

kegg
ID rcu:RCOM_1581970
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002513638.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q8LG95
description Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1
trembl
ID B9RIR9
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1581970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31789: 132176-134915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_180 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000819_080 0.070650366 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_000270_260 0.0772695332 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
4 Hb_003939_050 0.0787669478 - - protein with unknown function [Ricinus communis]
5 Hb_022693_140 0.089682405 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
6 Hb_000329_320 0.0916756881 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
7 Hb_000815_070 0.0921963185 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
8 Hb_029879_010 0.1003165318 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
9 Hb_030736_100 0.101904121 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012022_150 0.1034276495 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
11 Hb_001322_140 0.1038987674 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
12 Hb_000224_160 0.1045758375 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_011716_130 0.1064056987 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
14 Hb_000804_040 0.1073859822 - - protein with unknown function [Ricinus communis]
15 Hb_008165_060 0.1108205227 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
16 Hb_032264_070 0.1112933168 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
17 Hb_002835_040 0.1128455054 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
18 Hb_001019_190 0.1135165754 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000200_030 0.1143309649 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
20 Hb_007632_030 0.1152734531 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000302_180 Hb_000302_180 Hb_000819_080 Hb_000819_080 Hb_000302_180--Hb_000819_080 Hb_000270_260 Hb_000270_260 Hb_000302_180--Hb_000270_260 Hb_003939_050 Hb_003939_050 Hb_000302_180--Hb_003939_050 Hb_022693_140 Hb_022693_140 Hb_000302_180--Hb_022693_140 Hb_000329_320 Hb_000329_320 Hb_000302_180--Hb_000329_320 Hb_000815_070 Hb_000815_070 Hb_000302_180--Hb_000815_070 Hb_000819_080--Hb_003939_050 Hb_001019_190 Hb_001019_190 Hb_000819_080--Hb_001019_190 Hb_002681_070 Hb_002681_070 Hb_000819_080--Hb_002681_070 Hb_030736_100 Hb_030736_100 Hb_000819_080--Hb_030736_100 Hb_004155_010 Hb_004155_010 Hb_000819_080--Hb_004155_010 Hb_082609_010 Hb_082609_010 Hb_000270_260--Hb_082609_010 Hb_012022_150 Hb_012022_150 Hb_000270_260--Hb_012022_150 Hb_000270_260--Hb_000329_320 Hb_111985_050 Hb_111985_050 Hb_000270_260--Hb_111985_050 Hb_001322_140 Hb_001322_140 Hb_000270_260--Hb_001322_140 Hb_003939_050--Hb_030736_100 Hb_029879_010 Hb_029879_010 Hb_003939_050--Hb_029879_010 Hb_000883_020 Hb_000883_020 Hb_003939_050--Hb_000883_020 Hb_001141_020 Hb_001141_020 Hb_003939_050--Hb_001141_020 Hb_007632_030 Hb_007632_030 Hb_003939_050--Hb_007632_030 Hb_022693_140--Hb_012022_150 Hb_000804_040 Hb_000804_040 Hb_022693_140--Hb_000804_040 Hb_000224_160 Hb_000224_160 Hb_022693_140--Hb_000224_160 Hb_022693_140--Hb_029879_010 Hb_000184_170 Hb_000184_170 Hb_022693_140--Hb_000184_170 Hb_000137_040 Hb_000137_040 Hb_022693_140--Hb_000137_040 Hb_032264_070 Hb_032264_070 Hb_000329_320--Hb_032264_070 Hb_005269_070 Hb_005269_070 Hb_000329_320--Hb_005269_070 Hb_002490_020 Hb_002490_020 Hb_000329_320--Hb_002490_020 Hb_000917_060 Hb_000917_060 Hb_000329_320--Hb_000917_060 Hb_000329_320--Hb_000883_020 Hb_000866_260 Hb_000866_260 Hb_000329_320--Hb_000866_260 Hb_000815_070--Hb_000329_320 Hb_000985_030 Hb_000985_030 Hb_000815_070--Hb_000985_030 Hb_011716_130 Hb_011716_130 Hb_000815_070--Hb_011716_130 Hb_002600_090 Hb_002600_090 Hb_000815_070--Hb_002600_090 Hb_000815_070--Hb_032264_070 Hb_001489_080 Hb_001489_080 Hb_000815_070--Hb_001489_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7921 8.06691 22.7062 7.28042 23.3434 28.5634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.8037 25.5933 30.1298 20.9802 32.7563

CAGE analysis