Hb_000302_190

Information

Type -
Description -
Location Contig302: 135575-140174
Sequence    

Annotation

kegg
ID pop:POPTR_0004s07090g
description hypothetical protein
nr
ID XP_012090170.1
description PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
swissprot
ID Q0WMN5
description Uncharacterized protein At3g49140 OS=Arabidopsis thaliana GN=At3g49140 PE=1 SV=2
trembl
ID A0A067JRT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26045 PE=4 SV=1
Gene Ontology
ID GO:0010181
description pentatricopeptide repeat superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31790: 136004-136734 , PASA_asmbl_31791: 136955-139910
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_190 0.0 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
2 Hb_001789_160 0.0788628379 - - PREDICTED: putative transporter arsB [Jatropha curcas]
3 Hb_003071_030 0.0807867305 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
4 Hb_001279_090 0.0864051168 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
5 Hb_000224_220 0.0873960312 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]
6 Hb_007594_080 0.0911171761 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
7 Hb_000808_210 0.0941420152 - - hypothetical protein EUTSA_v10023481mg [Eutrema salsugineum]
8 Hb_005701_090 0.1021746307 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000562_070 0.1036528916 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
10 Hb_010620_050 0.1039994504 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
11 Hb_002447_050 0.1040073841 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_001140_180 0.1042680654 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
13 Hb_031042_060 0.1049270983 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_012779_080 0.1090462627 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
15 Hb_000331_340 0.1099309985 - - PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
16 Hb_006911_070 0.110223898 - - 50S ribosomal protein L1p, putative [Ricinus communis]
17 Hb_001279_020 0.1104957082 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
18 Hb_001623_490 0.1105156603 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
19 Hb_000094_100 0.1106450198 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
20 Hb_000260_710 0.1128657394 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000302_190 Hb_000302_190 Hb_001789_160 Hb_001789_160 Hb_000302_190--Hb_001789_160 Hb_003071_030 Hb_003071_030 Hb_000302_190--Hb_003071_030 Hb_001279_090 Hb_001279_090 Hb_000302_190--Hb_001279_090 Hb_000224_220 Hb_000224_220 Hb_000302_190--Hb_000224_220 Hb_007594_080 Hb_007594_080 Hb_000302_190--Hb_007594_080 Hb_000808_210 Hb_000808_210 Hb_000302_190--Hb_000808_210 Hb_001789_160--Hb_003071_030 Hb_000094_100 Hb_000094_100 Hb_001789_160--Hb_000094_100 Hb_031042_060 Hb_031042_060 Hb_001789_160--Hb_031042_060 Hb_000613_120 Hb_000613_120 Hb_001789_160--Hb_000613_120 Hb_000260_710 Hb_000260_710 Hb_001789_160--Hb_000260_710 Hb_010620_050 Hb_010620_050 Hb_003071_030--Hb_010620_050 Hb_002107_050 Hb_002107_050 Hb_003071_030--Hb_002107_050 Hb_000327_330 Hb_000327_330 Hb_003071_030--Hb_000327_330 Hb_012779_080 Hb_012779_080 Hb_003071_030--Hb_012779_080 Hb_001053_080 Hb_001053_080 Hb_001279_090--Hb_001053_080 Hb_001279_020 Hb_001279_020 Hb_001279_090--Hb_001279_020 Hb_001279_090--Hb_000808_210 Hb_000358_210 Hb_000358_210 Hb_001279_090--Hb_000358_210 Hb_070624_010 Hb_070624_010 Hb_001279_090--Hb_070624_010 Hb_004225_040 Hb_004225_040 Hb_000224_220--Hb_004225_040 Hb_005701_090 Hb_005701_090 Hb_000224_220--Hb_005701_090 Hb_001140_180 Hb_001140_180 Hb_000224_220--Hb_001140_180 Hb_000771_170 Hb_000771_170 Hb_000224_220--Hb_000771_170 Hb_000224_220--Hb_001279_090 Hb_007594_080--Hb_001279_020 Hb_007594_080--Hb_010620_050 Hb_001663_130 Hb_001663_130 Hb_007594_080--Hb_001663_130 Hb_000529_130 Hb_000529_130 Hb_007594_080--Hb_000529_130 Hb_001689_050 Hb_001689_050 Hb_007594_080--Hb_001689_050 Hb_030131_020 Hb_030131_020 Hb_000808_210--Hb_030131_020 Hb_001450_020 Hb_001450_020 Hb_000808_210--Hb_001450_020 Hb_000808_210--Hb_070624_010 Hb_000808_210--Hb_000224_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.56558 3.76045 13.2458 6.41637 5.55807 2.84913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.44204 1.87467 1.31208 4.02098 11.4563

CAGE analysis