Hb_000302_200

Information

Type -
Description -
Location Contig302: 140332-141345
Sequence    

Annotation

kegg
ID rcu:RCOM_1581990
description ornithine cyclodeaminase, putative (EC:4.3.1.12)
nr
ID XP_002513640.1
description ornithine cyclodeaminase, putative [Ricinus communis]
swissprot
ID Q485R8
description Delta(1)-pyrroline-2-carboxylate reductase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=lhpI PE=1 SV=1
trembl
ID B9RIS1
description Ornithine cyclodeaminase, putative OS=Ricinus communis GN=RCOM_1581990 PE=4 SV=1
Gene Ontology
ID GO:0009507
description ketimine reductase mu-crystallin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31792: 140170-141420
cDNA
(Sanger)
(ID:Location)		 019_B16.ab1: 140682-141399

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_200 0.0 - - ornithine cyclodeaminase, putative [Ricinus communis]
2 Hb_000792_040 0.0672751436 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
3 Hb_004994_090 0.0971083999 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
4 Hb_006501_160 0.0975193828 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
5 Hb_001031_090 0.1053278091 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
6 Hb_005215_020 0.1086574806 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
7 Hb_002995_040 0.1104003702 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
8 Hb_001019_050 0.1123434213 - - PREDICTED: importin-13 [Jatropha curcas]
9 Hb_007576_200 0.1133794609 - - amino acid transporter, putative [Ricinus communis]
10 Hb_002915_060 0.1156083445 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
11 Hb_083799_010 0.1158295473 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_002122_080 0.1178798981 - - -
13 Hb_000676_040 0.118016012 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
14 Hb_000002_270 0.1185334818 - - hypothetical protein VITISV_043897 [Vitis vinifera]
15 Hb_089140_040 0.1194350236 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
16 Hb_025336_020 0.1196087455 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
17 Hb_004109_380 0.1197373822 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
18 Hb_001268_310 0.1200917431 - - -
19 Hb_007747_080 0.1216625097 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000220_120 0.1221562491 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000302_200 Hb_000302_200 Hb_000792_040 Hb_000792_040 Hb_000302_200--Hb_000792_040 Hb_004994_090 Hb_004994_090 Hb_000302_200--Hb_004994_090 Hb_006501_160 Hb_006501_160 Hb_000302_200--Hb_006501_160 Hb_001031_090 Hb_001031_090 Hb_000302_200--Hb_001031_090 Hb_005215_020 Hb_005215_020 Hb_000302_200--Hb_005215_020 Hb_002995_040 Hb_002995_040 Hb_000302_200--Hb_002995_040 Hb_185830_070 Hb_185830_070 Hb_000792_040--Hb_185830_070 Hb_004450_070 Hb_004450_070 Hb_000792_040--Hb_004450_070 Hb_007576_200 Hb_007576_200 Hb_000792_040--Hb_007576_200 Hb_000792_040--Hb_006501_160 Hb_008246_020 Hb_008246_020 Hb_000792_040--Hb_008246_020 Hb_000009_330 Hb_000009_330 Hb_004994_090--Hb_000009_330 Hb_000059_020 Hb_000059_020 Hb_004994_090--Hb_000059_020 Hb_001935_140 Hb_001935_140 Hb_004994_090--Hb_001935_140 Hb_000406_110 Hb_000406_110 Hb_004994_090--Hb_000406_110 Hb_008948_140 Hb_008948_140 Hb_004994_090--Hb_008948_140 Hb_073171_100 Hb_073171_100 Hb_006501_160--Hb_073171_100 Hb_000347_450 Hb_000347_450 Hb_006501_160--Hb_000347_450 Hb_028960_030 Hb_028960_030 Hb_006501_160--Hb_028960_030 Hb_001269_380 Hb_001269_380 Hb_006501_160--Hb_001269_380 Hb_000997_180 Hb_000997_180 Hb_006501_160--Hb_000997_180 Hb_016734_060 Hb_016734_060 Hb_001031_090--Hb_016734_060 Hb_004109_380 Hb_004109_380 Hb_001031_090--Hb_004109_380 Hb_004223_160 Hb_004223_160 Hb_001031_090--Hb_004223_160 Hb_001031_090--Hb_008948_140 Hb_049436_010 Hb_049436_010 Hb_001031_090--Hb_049436_010 Hb_002889_020 Hb_002889_020 Hb_001031_090--Hb_002889_020 Hb_006006_040 Hb_006006_040 Hb_005215_020--Hb_006006_040 Hb_000085_450 Hb_000085_450 Hb_005215_020--Hb_000085_450 Hb_000089_180 Hb_000089_180 Hb_005215_020--Hb_000089_180 Hb_007839_020 Hb_007839_020 Hb_005215_020--Hb_007839_020 Hb_000656_150 Hb_000656_150 Hb_005215_020--Hb_000656_150 Hb_001328_080 Hb_001328_080 Hb_005215_020--Hb_001328_080 Hb_000334_260 Hb_000334_260 Hb_002995_040--Hb_000334_260 Hb_001558_040 Hb_001558_040 Hb_002995_040--Hb_001558_040 Hb_000579_130 Hb_000579_130 Hb_002995_040--Hb_000579_130 Hb_001307_240 Hb_001307_240 Hb_002995_040--Hb_001307_240 Hb_002995_040--Hb_004450_070 Hb_002995_040--Hb_000085_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0014 33.2553 9.76915 23.1573 7.98551 9.08637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7431 9.5193 5.99017 32.0166 17.5681

CAGE analysis