Hb_000302_220

Information

Type -
Description -
Location Contig302: 149683-153971
Sequence    

Annotation

kegg
ID pop:POPTR_0014s08170g
description POPTRDRAFT_900024; hypothetical protein
nr
ID XP_012083368.1
description PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
swissprot
ID Q6EWX0
description Origin of replication complex subunit 5 OS=Arabidopsis thaliana GN=ORC5 PE=1 SV=1
trembl
ID A0A067K0L8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14384 PE=4 SV=1
Gene Ontology
ID GO:0000808
description origin recognition complex subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31793: 149700-151850 , PASA_asmbl_31794: 149990-152786 , PASA_asmbl_31795: 152933-153640 , PASA_asmbl_31796: 153699-154653
cDNA
(Sanger)
(ID:Location)		 045_A09r.ab1: 150002-150655

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_220 0.0 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
2 Hb_003632_010 0.0803229926 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001842_040 0.0845502109 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
4 Hb_138585_060 0.0936655806 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
5 Hb_000023_340 0.095277319 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
6 Hb_000963_180 0.0976313508 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
7 Hb_001140_060 0.0984721455 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
8 Hb_000975_300 0.1004279185 - - Rab2 [Hevea brasiliensis]
9 Hb_000441_190 0.1015887916 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
10 Hb_008300_010 0.1024026606 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
11 Hb_012505_010 0.1026121856 - - mak, putative [Ricinus communis]
12 Hb_000062_340 0.1028261444 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
13 Hb_032803_010 0.1039294516 - - PREDICTED: glycosyltransferase-like At2g41451 [Jatropha curcas]
14 Hb_000086_070 0.1043807087 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
15 Hb_001687_040 0.1052410979 - - actin-depolymerizing factor [Hevea brasiliensis]
16 Hb_029866_070 0.1054888336 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
17 Hb_003455_040 0.1064361274 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
18 Hb_000029_200 0.1068936091 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
19 Hb_007594_120 0.107130713 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
20 Hb_002864_050 0.1099279272 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]

Gene co-expression network

sample Hb_000302_220 Hb_000302_220 Hb_003632_010 Hb_003632_010 Hb_000302_220--Hb_003632_010 Hb_001842_040 Hb_001842_040 Hb_000302_220--Hb_001842_040 Hb_138585_060 Hb_138585_060 Hb_000302_220--Hb_138585_060 Hb_000023_340 Hb_000023_340 Hb_000302_220--Hb_000023_340 Hb_000963_180 Hb_000963_180 Hb_000302_220--Hb_000963_180 Hb_001140_060 Hb_001140_060 Hb_000302_220--Hb_001140_060 Hb_000046_110 Hb_000046_110 Hb_003632_010--Hb_000046_110 Hb_006117_070 Hb_006117_070 Hb_003632_010--Hb_006117_070 Hb_001109_020 Hb_001109_020 Hb_003632_010--Hb_001109_020 Hb_002027_210 Hb_002027_210 Hb_003632_010--Hb_002027_210 Hb_003455_040 Hb_003455_040 Hb_003632_010--Hb_003455_040 Hb_000377_060 Hb_000377_060 Hb_003632_010--Hb_000377_060 Hb_000441_190 Hb_000441_190 Hb_001842_040--Hb_000441_190 Hb_001461_010 Hb_001461_010 Hb_001842_040--Hb_001461_010 Hb_005278_020 Hb_005278_020 Hb_001842_040--Hb_005278_020 Hb_007100_030 Hb_007100_030 Hb_001842_040--Hb_007100_030 Hb_000283_110 Hb_000283_110 Hb_001842_040--Hb_000283_110 Hb_003893_050 Hb_003893_050 Hb_001842_040--Hb_003893_050 Hb_021409_030 Hb_021409_030 Hb_138585_060--Hb_021409_030 Hb_000072_080 Hb_000072_080 Hb_138585_060--Hb_000072_080 Hb_000258_170 Hb_000258_170 Hb_138585_060--Hb_000258_170 Hb_001141_030 Hb_001141_030 Hb_138585_060--Hb_001141_030 Hb_138585_060--Hb_007100_030 Hb_000479_010 Hb_000479_010 Hb_138585_060--Hb_000479_010 Hb_000023_340--Hb_000963_180 Hb_006573_220 Hb_006573_220 Hb_000023_340--Hb_006573_220 Hb_000023_340--Hb_000441_190 Hb_000023_340--Hb_001141_030 Hb_000023_340--Hb_003632_010 Hb_000023_340--Hb_001842_040 Hb_029866_070 Hb_029866_070 Hb_000963_180--Hb_029866_070 Hb_000963_180--Hb_000046_110 Hb_000963_180--Hb_001461_010 Hb_001829_060 Hb_001829_060 Hb_000963_180--Hb_001829_060 Hb_029866_040 Hb_029866_040 Hb_000963_180--Hb_029866_040 Hb_001140_060--Hb_006117_070 Hb_012753_160 Hb_012753_160 Hb_001140_060--Hb_012753_160 Hb_008300_010 Hb_008300_010 Hb_001140_060--Hb_008300_010 Hb_001140_060--Hb_000479_010 Hb_101705_030 Hb_101705_030 Hb_001140_060--Hb_101705_030 Hb_008878_030 Hb_008878_030 Hb_001140_060--Hb_008878_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.32034 0.623781 1.80464 3.45401 2.79516 3.88061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.66912 9.86859 7.77868 0.972723 2.11276

CAGE analysis