Hb_000302_230

Information

Type -
Description -
Location Contig302: 149900-150445
Sequence    

Annotation

kegg
ID rcu:RCOM_1582030
description hypothetical protein
nr
ID XP_002513644.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LTD9
description Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1
trembl
ID B9RIS5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582030 PE=4 SV=1
Gene Ontology
ID GO:0009507
description sterol regulatory element-binding protein cleavage-activating

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 045_A09.ab1: 149894-150655

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000009_510 0.091575657 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
3 Hb_000393_040 0.0959022861 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
4 Hb_006583_030 0.1000799986 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
5 Hb_006681_020 0.1014215565 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
6 Hb_137216_010 0.1087563159 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
7 Hb_003680_060 0.1114033514 - - hypothetical protein VITISV_022322 [Vitis vinifera]
8 Hb_002485_050 0.1157912766 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
9 Hb_004007_170 0.117048002 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_002495_090 0.1182845796 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
11 Hb_015175_040 0.121227905 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001047_180 0.1255098438 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009545_070 0.1259502085 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
14 Hb_000703_070 0.127644903 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
15 Hb_003470_100 0.1278422024 - - protein binding protein, putative [Ricinus communis]
16 Hb_000123_360 0.1278504103 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000544_080 0.1281967611 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
18 Hb_001623_380 0.1282702258 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
19 Hb_001999_260 0.1285222496 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
20 Hb_000174_080 0.1290812529 - - 4-nitrophenylphosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000302_230 Hb_000302_230 Hb_000009_510 Hb_000009_510 Hb_000302_230--Hb_000009_510 Hb_000393_040 Hb_000393_040 Hb_000302_230--Hb_000393_040 Hb_006583_030 Hb_006583_030 Hb_000302_230--Hb_006583_030 Hb_006681_020 Hb_006681_020 Hb_000302_230--Hb_006681_020 Hb_137216_010 Hb_137216_010 Hb_000302_230--Hb_137216_010 Hb_003680_060 Hb_003680_060 Hb_000302_230--Hb_003680_060 Hb_000009_510--Hb_006681_020 Hb_002485_050 Hb_002485_050 Hb_000009_510--Hb_002485_050 Hb_000009_510--Hb_137216_010 Hb_000174_080 Hb_000174_080 Hb_000009_510--Hb_000174_080 Hb_000009_510--Hb_006583_030 Hb_000393_040--Hb_137216_010 Hb_177281_010 Hb_177281_010 Hb_000393_040--Hb_177281_010 Hb_000393_040--Hb_000009_510 Hb_001135_070 Hb_001135_070 Hb_000393_040--Hb_001135_070 Hb_000974_040 Hb_000974_040 Hb_000393_040--Hb_000974_040 Hb_006583_030--Hb_006681_020 Hb_001999_260 Hb_001999_260 Hb_006583_030--Hb_001999_260 Hb_004855_070 Hb_004855_070 Hb_006583_030--Hb_004855_070 Hb_001047_180 Hb_001047_180 Hb_006583_030--Hb_001047_180 Hb_010557_010 Hb_010557_010 Hb_006583_030--Hb_010557_010 Hb_000768_120 Hb_000768_120 Hb_006681_020--Hb_000768_120 Hb_006681_020--Hb_001999_260 Hb_006681_020--Hb_004855_070 Hb_004117_150 Hb_004117_150 Hb_006681_020--Hb_004117_150 Hb_002495_090 Hb_002495_090 Hb_137216_010--Hb_002495_090 Hb_137216_010--Hb_000174_080 Hb_137216_010--Hb_000768_120 Hb_009393_130 Hb_009393_130 Hb_003680_060--Hb_009393_130 Hb_009838_070 Hb_009838_070 Hb_003680_060--Hb_009838_070 Hb_000116_220 Hb_000116_220 Hb_003680_060--Hb_000116_220 Hb_004650_050 Hb_004650_050 Hb_003680_060--Hb_004650_050 Hb_091433_050 Hb_091433_050 Hb_003680_060--Hb_091433_050 Hb_000711_030 Hb_000711_030 Hb_003680_060--Hb_000711_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.81005 5.49326 50.3909 10.8839 0.742161 2.02228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91443 3.11445 0.631182 0.680435 47.2557

CAGE analysis