Hb_000302_260

Information

Type -
Description -
Location Contig302: 165924-167217
Sequence    

Annotation

kegg
ID rcu:RCOM_2072230
description metal ion binding protein, putative
nr
ID BAG15861.1
description hypothetical protein [Bruguiera gymnorhiza]
swissprot
ID Q6L440
description Putative late blight resistance protein homolog R1A-3 OS=Solanum demissum GN=R1A-3 PE=5 SV=2
trembl
ID B1Q4T5
description Uncharacterized protein OS=Bruguiera gymnorhiza PE=2 SV=1
Gene Ontology
ID GO:0046872
description late blight resistance protein homolog r1b-19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31797: 165885-167182 , PASA_asmbl_31798: 166043-167099 , PASA_asmbl_31799: 166411-167196
cDNA
(Sanger)
(ID:Location)		 018_O10.ab1: 166228-167131

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_260 0.0 - - hypothetical protein [Bruguiera gymnorhiza]
2 Hb_002042_130 0.1089783759 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
3 Hb_000402_210 0.1100185646 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
4 Hb_028487_020 0.1190924765 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
5 Hb_189208_020 0.127714211 - - LRX2, putative [Ricinus communis]
6 Hb_000086_340 0.1292788046 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
7 Hb_088753_010 0.1307074656 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
8 Hb_000503_010 0.1331279519 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
9 Hb_000451_070 0.1337400346 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_000170_240 0.1423643253 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
11 Hb_004724_210 0.142665746 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005306_190 0.1428587388 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
13 Hb_006538_080 0.1441435098 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
14 Hb_000649_110 0.146210766 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
15 Hb_006788_140 0.1466939351 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
16 Hb_007943_050 0.1504149766 - - peroxiredoxin, putative [Ricinus communis]
17 Hb_001564_080 0.1506430729 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
18 Hb_003175_030 0.1534187308 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
19 Hb_000122_050 0.154528923 - - conserved hypothetical protein [Ricinus communis]
20 Hb_109484_010 0.1550439784 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]

Gene co-expression network

sample Hb_000302_260 Hb_000302_260 Hb_002042_130 Hb_002042_130 Hb_000302_260--Hb_002042_130 Hb_000402_210 Hb_000402_210 Hb_000302_260--Hb_000402_210 Hb_028487_020 Hb_028487_020 Hb_000302_260--Hb_028487_020 Hb_189208_020 Hb_189208_020 Hb_000302_260--Hb_189208_020 Hb_000086_340 Hb_000086_340 Hb_000302_260--Hb_000086_340 Hb_088753_010 Hb_088753_010 Hb_000302_260--Hb_088753_010 Hb_000538_230 Hb_000538_230 Hb_002042_130--Hb_000538_230 Hb_034688_020 Hb_034688_020 Hb_002042_130--Hb_034688_020 Hb_000649_110 Hb_000649_110 Hb_002042_130--Hb_000649_110 Hb_001159_110 Hb_001159_110 Hb_002042_130--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_002042_130--Hb_005074_030 Hb_000402_210--Hb_088753_010 Hb_000451_070 Hb_000451_070 Hb_000402_210--Hb_000451_070 Hb_000402_210--Hb_002042_130 Hb_007382_120 Hb_007382_120 Hb_000402_210--Hb_007382_120 Hb_006538_080 Hb_006538_080 Hb_000402_210--Hb_006538_080 Hb_005306_190 Hb_005306_190 Hb_028487_020--Hb_005306_190 Hb_002097_200 Hb_002097_200 Hb_028487_020--Hb_002097_200 Hb_000432_040 Hb_000432_040 Hb_028487_020--Hb_000432_040 Hb_028487_020--Hb_000451_070 Hb_001564_080 Hb_001564_080 Hb_028487_020--Hb_001564_080 Hb_189208_020--Hb_002097_200 Hb_001894_050 Hb_001894_050 Hb_189208_020--Hb_001894_050 Hb_003175_030 Hb_003175_030 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_006788_140 Hb_006788_140 Hb_189208_020--Hb_006788_140 Hb_189208_020--Hb_001564_080 Hb_149714_010 Hb_149714_010 Hb_000086_340--Hb_149714_010 Hb_000475_040 Hb_000475_040 Hb_000086_340--Hb_000475_040 Hb_000122_050 Hb_000122_050 Hb_000086_340--Hb_000122_050 Hb_030116_010 Hb_030116_010 Hb_000086_340--Hb_030116_010 Hb_155599_010 Hb_155599_010 Hb_000086_340--Hb_155599_010 Hb_088753_010--Hb_002097_200 Hb_088753_010--Hb_000451_070 Hb_088753_010--Hb_189208_020 Hb_088753_010--Hb_006788_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
118.308 401.107 156.621 167.083 59.7079 120.472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
218.13 251.584 80.9092 179.779 28.2983

CAGE analysis