Hb_000302_280

Information

Type -
Description -
Location Contig302: 183092-186186
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04190g
description 40S ribosomal protein S10-1
nr
ID AFW58259.1
description hypothetical protein ZEAMMB73_772347 [Zea mays]
swissprot
ID Q08745
description 40S ribosomal protein S10-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS10A PE=1 SV=1
trembl
ID K7UII3
description Uncharacterized protein OS=Zea mays GN=Zm.93675 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31803: 183101-186084 , PASA_asmbl_31804: 185133-185320 , PASA_asmbl_31805: 183371-183481
cDNA
(Sanger)
(ID:Location)		 053_H08.ab1: 183110-186031

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_280 0.0 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
2 Hb_072922_020 0.0702045911 - - SNARE-like superfamily protein [Theobroma cacao]
3 Hb_005463_140 0.0754162246 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
4 Hb_001369_170 0.0799284354 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
5 Hb_000384_120 0.0895412501 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
6 Hb_003376_190 0.0954036866 - - syntaxin, putative [Ricinus communis]
7 Hb_000707_020 0.0954597211 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
8 Hb_005269_080 0.095980263 - - protein with unknown function [Ricinus communis]
9 Hb_001157_080 0.0964766555 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000896_040 0.0971048954 - - BnaC02g13240D [Brassica napus]
11 Hb_001172_100 0.0976251165 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
12 Hb_000735_090 0.097813057 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
13 Hb_001085_270 0.098195776 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
14 Hb_006915_040 0.0984492786 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
15 Hb_000016_080 0.0988543354 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
16 Hb_033642_080 0.09974292 - - V-type proton ATPase subunit E [Hevea brasiliensis]
17 Hb_004567_120 0.0999282924 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
18 Hb_000417_260 0.0999593942 - - protein with unknown function [Ricinus communis]
19 Hb_012490_050 0.100127776 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
20 Hb_086639_090 0.1006477814 - - 60S ribosomal protein L7a, putative [Ricinus communis]

Gene co-expression network

sample Hb_000302_280 Hb_000302_280 Hb_072922_020 Hb_072922_020 Hb_000302_280--Hb_072922_020 Hb_005463_140 Hb_005463_140 Hb_000302_280--Hb_005463_140 Hb_001369_170 Hb_001369_170 Hb_000302_280--Hb_001369_170 Hb_000384_120 Hb_000384_120 Hb_000302_280--Hb_000384_120 Hb_003376_190 Hb_003376_190 Hb_000302_280--Hb_003376_190 Hb_000707_020 Hb_000707_020 Hb_000302_280--Hb_000707_020 Hb_072922_020--Hb_005463_140 Hb_072922_020--Hb_000384_120 Hb_000087_130 Hb_000087_130 Hb_072922_020--Hb_000087_130 Hb_000254_050 Hb_000254_050 Hb_072922_020--Hb_000254_050 Hb_000789_230 Hb_000789_230 Hb_072922_020--Hb_000789_230 Hb_000224_140 Hb_000224_140 Hb_005463_140--Hb_000224_140 Hb_001155_040 Hb_001155_040 Hb_005463_140--Hb_001155_040 Hb_068056_030 Hb_068056_030 Hb_005463_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_005463_140--Hb_001512_080 Hb_001085_270 Hb_001085_270 Hb_001369_170--Hb_001085_270 Hb_000788_010 Hb_000788_010 Hb_001369_170--Hb_000788_010 Hb_000567_410 Hb_000567_410 Hb_001369_170--Hb_000567_410 Hb_004543_040 Hb_004543_040 Hb_001369_170--Hb_004543_040 Hb_006478_150 Hb_006478_150 Hb_001369_170--Hb_006478_150 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010 Hb_000107_300 Hb_000107_300 Hb_003376_190--Hb_000107_300 Hb_003376_190--Hb_002324_010 Hb_000215_330 Hb_000215_330 Hb_003376_190--Hb_000215_330 Hb_005235_030 Hb_005235_030 Hb_003376_190--Hb_005235_030 Hb_003376_190--Hb_005269_080 Hb_006915_040 Hb_006915_040 Hb_003376_190--Hb_006915_040 Hb_012490_050 Hb_012490_050 Hb_000707_020--Hb_012490_050 Hb_000834_030 Hb_000834_030 Hb_000707_020--Hb_000834_030 Hb_138585_040 Hb_138585_040 Hb_000707_020--Hb_138585_040 Hb_001005_080 Hb_001005_080 Hb_000707_020--Hb_001005_080 Hb_000049_050 Hb_000049_050 Hb_000707_020--Hb_000049_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.9512 19.6195 30.5935 91.1243 31.3888 57.8058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
111.858 254.115 108.615 93.5993 53.9583

CAGE analysis