Hb_000302_360

Information

Type -
Description -
Location Contig302: 263593-265891
Sequence    

Annotation

kegg
ID rcu:RCOM_1582530
description beta-carotene hydroxylase, putative
nr
ID XP_002513654.1
description beta-carotene hydroxylase, putative [Ricinus communis]
swissprot
ID Q9SZZ8
description Beta-carotene 3-hydroxylase 1, chloroplastic OS=Arabidopsis thaliana GN=BETA-OHASE 1 PE=1 SV=1
trembl
ID B9RIT5
description Beta-carotene hydroxylase, putative OS=Ricinus communis GN=RCOM_1582530 PE=4 SV=1
Gene Ontology
ID GO:0016021
description beta-carotene hydroxylase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31814: 263983-265328 , PASA_asmbl_31815: 263752-265959 , PASA_asmbl_31816: 264104-264338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_360 0.0 - - beta-carotene hydroxylase, putative [Ricinus communis]
2 Hb_010534_040 0.0707752319 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
3 Hb_001269_060 0.0886929794 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
4 Hb_000645_260 0.0887827723 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
5 Hb_001606_010 0.0889688367 - - kinase, putative [Ricinus communis]
6 Hb_014720_140 0.0906788806 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
7 Hb_015934_060 0.0918127578 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
8 Hb_000486_020 0.0923263582 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
9 Hb_003531_050 0.0926267263 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
10 Hb_001377_120 0.0954889495 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
11 Hb_121313_010 0.0974283643 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
12 Hb_132356_010 0.1002054056 - - receptor serine/threonine kinase, putative [Ricinus communis]
13 Hb_000890_170 0.102024311 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
14 Hb_000007_330 0.1028476546 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
15 Hb_005892_050 0.1033800036 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
16 Hb_006618_110 0.1051229738 - - -
17 Hb_003873_020 0.1052554669 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
18 Hb_011472_030 0.1072349025 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
19 Hb_001301_260 0.1090179568 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
20 Hb_000020_090 0.1092572667 - - hypothetical protein JCGZ_09084 [Jatropha curcas]

Gene co-expression network

sample Hb_000302_360 Hb_000302_360 Hb_010534_040 Hb_010534_040 Hb_000302_360--Hb_010534_040 Hb_001269_060 Hb_001269_060 Hb_000302_360--Hb_001269_060 Hb_000645_260 Hb_000645_260 Hb_000302_360--Hb_000645_260 Hb_001606_010 Hb_001606_010 Hb_000302_360--Hb_001606_010 Hb_014720_140 Hb_014720_140 Hb_000302_360--Hb_014720_140 Hb_015934_060 Hb_015934_060 Hb_000302_360--Hb_015934_060 Hb_000486_020 Hb_000486_020 Hb_010534_040--Hb_000486_020 Hb_001352_030 Hb_001352_030 Hb_010534_040--Hb_001352_030 Hb_010534_040--Hb_001606_010 Hb_010534_040--Hb_000645_260 Hb_002890_160 Hb_002890_160 Hb_010534_040--Hb_002890_160 Hb_001377_120 Hb_001377_120 Hb_001269_060--Hb_001377_120 Hb_121313_010 Hb_121313_010 Hb_001269_060--Hb_121313_010 Hb_001269_060--Hb_000645_260 Hb_004218_140 Hb_004218_140 Hb_001269_060--Hb_004218_140 Hb_027684_010 Hb_027684_010 Hb_001269_060--Hb_027684_010 Hb_000982_100 Hb_000982_100 Hb_000645_260--Hb_000982_100 Hb_000645_260--Hb_014720_140 Hb_033006_020 Hb_033006_020 Hb_000645_260--Hb_033006_020 Hb_000645_260--Hb_001377_120 Hb_001926_070 Hb_001926_070 Hb_001606_010--Hb_001926_070 Hb_000890_170 Hb_000890_170 Hb_001606_010--Hb_000890_170 Hb_001606_010--Hb_001352_030 Hb_001606_010--Hb_000486_020 Hb_032731_010 Hb_032731_010 Hb_001606_010--Hb_032731_010 Hb_003531_050 Hb_003531_050 Hb_001606_010--Hb_003531_050 Hb_014720_140--Hb_010534_040 Hb_012833_010 Hb_012833_010 Hb_014720_140--Hb_012833_010 Hb_000313_250 Hb_000313_250 Hb_014720_140--Hb_000313_250 Hb_014720_140--Hb_033006_020 Hb_000049_280 Hb_000049_280 Hb_015934_060--Hb_000049_280 Hb_015934_060--Hb_003531_050 Hb_015934_060--Hb_000645_260 Hb_015934_060--Hb_010534_040 Hb_015934_060--Hb_012833_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118159 15.2462 83.9306 44.3865 0.110992 0.138084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.236383 0.451621 1.79198 5.38148 55.6352

CAGE analysis