Hb_000303_060

Information

Type -
Description -
Location Contig303: 113440-115452
Sequence    

Annotation

kegg
ID rcu:RCOM_0812690
description o-methyltransferase, putative (EC:2.1.1.104)
nr
ID XP_002518739.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID Q43095
description Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1
trembl
ID B9RYF5
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_0812690 PE=4 SV=1
Gene Ontology
ID GO:0008171
description caffeoyl- o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31956: 113423-115419 , PASA_asmbl_31958: 114505-114836
cDNA
(Sanger)
(ID:Location)		 003_I03.ab1: 113633-115419 , 004_M18.ab1: 113641-115419 , 005_K08.ab1: 113749-115419 , 005_M23.ab1: 113668-115419 , 018_E09.ab1: 113701-115419 , 020_I05.ab1: 113640-115415 , 028_O04.ab1: 113727-115419 , 033_O18.ab1: 113796-115410 , 034_J11.ab1: 113610-115419 , 043_E04.ab1: 113636-115420 , 046_C04.ab1: 113585-115411 , 049_M05.ab1: 113808-115415

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000303_060 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_027506_030 0.0648825611 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
3 Hb_085962_010 0.0684570382 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
4 Hb_001396_030 0.0763518702 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
5 Hb_010264_020 0.082257687 - - unnamed protein product [Vitis vinifera]
6 Hb_009767_060 0.0863568829 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
7 Hb_004804_010 0.0943204238 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
8 Hb_032572_010 0.0946879169 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
9 Hb_012518_080 0.1009488623 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
10 Hb_000735_020 0.1016545752 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
11 Hb_007811_020 0.1032585719 - - PREDICTED: expansin-A6 [Jatropha curcas]
12 Hb_011918_070 0.1052611366 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
13 Hb_002272_120 0.1081987182 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
14 Hb_000112_080 0.1113736274 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
15 Hb_033312_070 0.1139839413 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
16 Hb_001287_090 0.114301567 - - Endoglucanase 4 [Aegilops tauschii]
17 Hb_006788_110 0.1148590281 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
18 Hb_002073_170 0.1161329703 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
19 Hb_001140_300 0.1162617648 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
20 Hb_001541_130 0.1179192251 - - GDSL esterase/lipase [Morus notabilis]

Gene co-expression network

sample Hb_000303_060 Hb_000303_060 Hb_027506_030 Hb_027506_030 Hb_000303_060--Hb_027506_030 Hb_085962_010 Hb_085962_010 Hb_000303_060--Hb_085962_010 Hb_001396_030 Hb_001396_030 Hb_000303_060--Hb_001396_030 Hb_010264_020 Hb_010264_020 Hb_000303_060--Hb_010264_020 Hb_009767_060 Hb_009767_060 Hb_000303_060--Hb_009767_060 Hb_004804_010 Hb_004804_010 Hb_000303_060--Hb_004804_010 Hb_027506_030--Hb_085962_010 Hb_027506_030--Hb_004804_010 Hb_027506_030--Hb_001396_030 Hb_027506_030--Hb_010264_020 Hb_032572_010 Hb_032572_010 Hb_027506_030--Hb_032572_010 Hb_085962_010--Hb_001396_030 Hb_085962_010--Hb_004804_010 Hb_085962_010--Hb_010264_020 Hb_002272_120 Hb_002272_120 Hb_085962_010--Hb_002272_120 Hb_000112_080 Hb_000112_080 Hb_001396_030--Hb_000112_080 Hb_007218_040 Hb_007218_040 Hb_001396_030--Hb_007218_040 Hb_005542_120 Hb_005542_120 Hb_001396_030--Hb_005542_120 Hb_010264_020--Hb_004804_010 Hb_010264_020--Hb_032572_010 Hb_010264_020--Hb_001396_030 Hb_009767_060--Hb_032572_010 Hb_002045_010 Hb_002045_010 Hb_009767_060--Hb_002045_010 Hb_004122_010 Hb_004122_010 Hb_009767_060--Hb_004122_010 Hb_009767_060--Hb_001396_030 Hb_001287_090 Hb_001287_090 Hb_009767_060--Hb_001287_090 Hb_138585_010 Hb_138585_010 Hb_004804_010--Hb_138585_010 Hb_012395_060 Hb_012395_060 Hb_004804_010--Hb_012395_060 Hb_169077_030 Hb_169077_030 Hb_004804_010--Hb_169077_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.329332 27.8832 303.926 550.373 0.417617 0.517107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.62557 1.20555 0.215016 102.449 271.589

CAGE analysis