Hb_000304_020

Information

Type -
Description -
Location Contig304: 5901-7361
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15270g
description POPTRDRAFT_769807; Glucan endo-1 family protein
nr
ID ACZ74626.1
description beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
swissprot
ID P52407
description Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2
trembl
ID D2K935
description Beta-1,3-glucanase form RRII Gln 3 OS=Hevea brasiliensis PE=3 SV=1
Gene Ontology
ID GO:0005773
description beta- -glucanase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32067: 6421-7287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000304_020 0.0 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
2 Hb_000849_040 0.0802464547 - - transcription factor, putative [Ricinus communis]
3 Hb_114684_020 0.0860661786 - - beta-1,3-glucanase [Hevea brasiliensis]
4 Hb_001366_220 0.0962548514 - - conserved hypothetical protein [Ricinus communis]
5 Hb_031403_010 0.1038064031 - - hypothetical protein POPTR_0001s40140g [Populus trichocarpa]
6 Hb_006787_040 0.105228026 - - polyadenylate-binding protein, putative [Ricinus communis]
7 Hb_005245_090 0.1057832162 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
8 Hb_000809_050 0.1083965374 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
9 Hb_000442_030 0.1130306655 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003751_120 0.1148074398 - - -
11 Hb_002890_220 0.1194331729 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
12 Hb_000771_140 0.1194853286 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
13 Hb_025087_010 0.1222451207 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
14 Hb_000072_280 0.1225415596 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
15 Hb_000809_040 0.1225535033 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
16 Hb_002298_040 0.1226603098 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
17 Hb_000387_080 0.123711951 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
18 Hb_001606_070 0.1238145362 - - fimbrin, putative [Ricinus communis]
19 Hb_000193_230 0.1255458319 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
20 Hb_003001_030 0.1259706865 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000304_020 Hb_000304_020 Hb_000849_040 Hb_000849_040 Hb_000304_020--Hb_000849_040 Hb_114684_020 Hb_114684_020 Hb_000304_020--Hb_114684_020 Hb_001366_220 Hb_001366_220 Hb_000304_020--Hb_001366_220 Hb_031403_010 Hb_031403_010 Hb_000304_020--Hb_031403_010 Hb_006787_040 Hb_006787_040 Hb_000304_020--Hb_006787_040 Hb_005245_090 Hb_005245_090 Hb_000304_020--Hb_005245_090 Hb_000442_030 Hb_000442_030 Hb_000849_040--Hb_000442_030 Hb_000849_040--Hb_006787_040 Hb_024505_040 Hb_024505_040 Hb_000849_040--Hb_024505_040 Hb_001606_070 Hb_001606_070 Hb_000849_040--Hb_001606_070 Hb_000387_080 Hb_000387_080 Hb_000849_040--Hb_000387_080 Hb_003001_030 Hb_003001_030 Hb_114684_020--Hb_003001_030 Hb_000771_140 Hb_000771_140 Hb_114684_020--Hb_000771_140 Hb_001767_010 Hb_001767_010 Hb_114684_020--Hb_001767_010 Hb_114684_020--Hb_000387_080 Hb_002609_260 Hb_002609_260 Hb_114684_020--Hb_002609_260 Hb_000809_040 Hb_000809_040 Hb_001366_220--Hb_000809_040 Hb_000313_380 Hb_000313_380 Hb_001366_220--Hb_000313_380 Hb_001366_220--Hb_000387_080 Hb_000085_310 Hb_000085_310 Hb_001366_220--Hb_000085_310 Hb_001981_090 Hb_001981_090 Hb_001366_220--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_001366_220--Hb_002357_040 Hb_003751_120 Hb_003751_120 Hb_031403_010--Hb_003751_120 Hb_001514_190 Hb_001514_190 Hb_031403_010--Hb_001514_190 Hb_005867_040 Hb_005867_040 Hb_031403_010--Hb_005867_040 Hb_009026_050 Hb_009026_050 Hb_031403_010--Hb_009026_050 Hb_031403_010--Hb_000809_040 Hb_006787_040--Hb_000442_030 Hb_000193_230 Hb_000193_230 Hb_006787_040--Hb_000193_230 Hb_006787_040--Hb_000387_080 Hb_006787_040--Hb_001366_220 Hb_001191_100 Hb_001191_100 Hb_006787_040--Hb_001191_100 Hb_005245_090--Hb_000771_140 Hb_005941_010 Hb_005941_010 Hb_005245_090--Hb_005941_010 Hb_004242_100 Hb_004242_100 Hb_005245_090--Hb_004242_100 Hb_098709_010 Hb_098709_010 Hb_005245_090--Hb_098709_010 Hb_026048_090 Hb_026048_090 Hb_005245_090--Hb_026048_090 Hb_009510_030 Hb_009510_030 Hb_005245_090--Hb_009510_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
129.221 10.6307 0.248318 2.78566 164.844 143.399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
206.475 133.73 176.283 43.6956 4.48304

CAGE analysis