Hb_000304_030

Information

Type -
Description -
Location Contig304: 9232-10269
Sequence    

Annotation

kegg
ID tcc:TCM_021348
description Heme oxygenase-like, multi-helical
nr
ID XP_012084059.1
description PREDICTED: seed maturation protein PM36 [Jatropha curcas]
swissprot
ID Q9SWB6
description Probable bifunctional TENA-E protein OS=Glycine max GN=TENA_E PE=2 SV=1
trembl
ID A0A067K6K3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18980 PE=4 SV=1
Gene Ontology
ID GO:0050334
description seed maturation protein pm36

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000304_030 0.0 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
2 Hb_000009_050 0.1036876459 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
3 Hb_141990_040 0.1312184402 - - Protein SCAR2, putative [Ricinus communis]
4 Hb_000009_180 0.1353309605 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
5 Hb_000225_060 0.1364137002 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
6 Hb_000465_300 0.1434483189 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
7 Hb_001341_100 0.146090308 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
8 Hb_012573_040 0.1479200063 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
9 Hb_004993_060 0.1507786259 - - -
10 Hb_002701_010 0.1515913294 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_004631_210 0.1517682959 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
12 Hb_001825_060 0.1524753553 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
13 Hb_163256_020 0.1558302572 - - fructokinase [Manihot esculenta]
14 Hb_000490_060 0.1573064478 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
15 Hb_000549_040 0.1581332191 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
16 Hb_022318_020 0.1599718199 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
17 Hb_012760_070 0.160747675 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_023771_010 0.1621169024 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
19 Hb_002631_180 0.1624402951 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
20 Hb_008770_030 0.1625653816 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]

Gene co-expression network

sample Hb_000304_030 Hb_000304_030 Hb_000009_050 Hb_000009_050 Hb_000304_030--Hb_000009_050 Hb_141990_040 Hb_141990_040 Hb_000304_030--Hb_141990_040 Hb_000009_180 Hb_000009_180 Hb_000304_030--Hb_000009_180 Hb_000225_060 Hb_000225_060 Hb_000304_030--Hb_000225_060 Hb_000465_300 Hb_000465_300 Hb_000304_030--Hb_000465_300 Hb_001341_100 Hb_001341_100 Hb_000304_030--Hb_001341_100 Hb_001604_150 Hb_001604_150 Hb_000009_050--Hb_001604_150 Hb_002701_010 Hb_002701_010 Hb_000009_050--Hb_002701_010 Hb_002307_310 Hb_002307_310 Hb_000009_050--Hb_002307_310 Hb_000684_040 Hb_000684_040 Hb_000009_050--Hb_000684_040 Hb_002631_180 Hb_002631_180 Hb_000009_050--Hb_002631_180 Hb_001825_060 Hb_001825_060 Hb_141990_040--Hb_001825_060 Hb_000009_450 Hb_000009_450 Hb_141990_040--Hb_000009_450 Hb_001856_200 Hb_001856_200 Hb_141990_040--Hb_001856_200 Hb_012573_040 Hb_012573_040 Hb_141990_040--Hb_012573_040 Hb_000549_040 Hb_000549_040 Hb_141990_040--Hb_000549_040 Hb_008770_030 Hb_008770_030 Hb_000009_180--Hb_008770_030 Hb_032278_030 Hb_032278_030 Hb_000009_180--Hb_032278_030 Hb_003994_060 Hb_003994_060 Hb_000009_180--Hb_003994_060 Hb_004453_050 Hb_004453_050 Hb_000009_180--Hb_004453_050 Hb_002097_200 Hb_002097_200 Hb_000009_180--Hb_002097_200 Hb_110560_010 Hb_110560_010 Hb_000225_060--Hb_110560_010 Hb_000099_150 Hb_000099_150 Hb_000225_060--Hb_000099_150 Hb_006538_080 Hb_006538_080 Hb_000225_060--Hb_006538_080 Hb_009620_020 Hb_009620_020 Hb_000225_060--Hb_009620_020 Hb_001102_240 Hb_001102_240 Hb_000225_060--Hb_001102_240 Hb_000225_060--Hb_002701_010 Hb_000749_050 Hb_000749_050 Hb_000465_300--Hb_000749_050 Hb_000173_470 Hb_000173_470 Hb_000465_300--Hb_000173_470 Hb_163256_020 Hb_163256_020 Hb_000465_300--Hb_163256_020 Hb_000723_230 Hb_000723_230 Hb_000465_300--Hb_000723_230 Hb_000890_150 Hb_000890_150 Hb_000465_300--Hb_000890_150 Hb_002045_070 Hb_002045_070 Hb_000465_300--Hb_002045_070 Hb_004631_210 Hb_004631_210 Hb_001341_100--Hb_004631_210 Hb_004993_060 Hb_004993_060 Hb_001341_100--Hb_004993_060 Hb_001486_030 Hb_001486_030 Hb_001341_100--Hb_001486_030 Hb_003442_070 Hb_003442_070 Hb_001341_100--Hb_003442_070 Hb_004064_010 Hb_004064_010 Hb_001341_100--Hb_004064_010 Hb_001341_100--Hb_000465_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.434335 3.59727 1.66451 1.73068 1.10629 1.14134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04655 4.4392 3.13228 3.18663 1.14577

CAGE analysis